barSeed - Barley Seed Development Database

Probe CUST_28274_PI390587928

Source Contig U35_42964

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28274_PI390587928	Hv_44K_v2	GGATCTTGTCCTCTATTTTAATTGAAGTATACCGTTTCCTGGCAAGGGATTGCATACAAT	598	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.321	0.504	1.099	1.523	1.259	1.860
Raw	3.258	11.171	23.097	54.118	14.283	24.078

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC39038	661	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_42964	661	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_42964 661 Hv_44K_v2
GCCTGTTTGAAGACCGGTTTAGCATTGCCTACAATCTTGACAGGGAATTCGGGCCAAGGC
TGAAGGATCACATGCAGTATTGTATTAATCATCCAGAGGAAATTAACAAGCTCTCTAAGG
TGAAATCACATCTTTCAGAGGTTAAAGGGATCATGATGGACAACATCGAGAAGGTCTGCA
TTTAAACGAACATGTTCTATCTGGGGCAATGGTCTGTTACACACAATTCCCTGTTGGAAA
ACAAGCATTGTCTCAGTCATCTCAAATTTCTAAATCTATTACACTATACACTGGAATTAA
TCTGTACTGTTTAAGTGAAATATAAAGCCAACTAGAGACCATCACATGTTCTTTTATGTA
CAGTTTGCTCTACAAGGGTGTGATATAAACGTGCTGTTTTTATATTTTAGAATTTTTAAG
TACATGGGTCTCATAAAAGTAACATGCACTTTTGTGGAGAAACTATGTCTTCTCACAGTA
ATACTTCATTAATTTACTGTGAGCTGGAGTTGATGCACTTTCGGAGGAAAATAAGTACTC
TTAAAATAGGCAGTGATAGGTGGTGCTGAGATTTAGTATAATATGAACAGTAATTTTTGG
ATCTTGTCCTCTATTTTAATTGAAGTATACCGTTTCCTGGCAAGGGATTGCATACAATTG
C

Homology of Contig U35_42964 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None