barSeed - Barley Seed Development Database

Probe CUST_2826_PI390587928

Source Contig U35_22829

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2826_PI390587928	Hv_44K_v2	TAAGTTATAAAGAATTGGGGGCAAAACGTTGTTACTTTTCGTGCGAGTTTATTTTGTCCA	1054	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.284	1.583	1.277	0.898	0.334	0.317
Raw	507.409	993.371	694.361	749.626	100.764	103.001

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63089.5	5343	2e-24	984 - 1043	100	60 / 60	plus	ABC02562 ABC39248
MLOC	MLOC_63089.7	4173	2e-24	977 - 1036	100	60 / 60	plus	ABC39248
MLOC	MLOC_63089.8	4446	2e-24	977 - 1036	100	60 / 60	plus	ABC39248
MLOC	MLOC_63089.6	3988	2e-24	977 - 1036	100	60 / 60	plus	ABC02562 ABC39248
MLOC	MLOC_63089.1	3315	2e-24	984 - 1043	100	60 / 60	plus	ABC39248
MLOC	MLOC_63089.2	3598	2e-24	984 - 1043	100	60 / 60	plus	ABC39248
MLOC	MLOC_63089.3	3736	2e-24	984 - 1043	100	60 / 60	plus	ABC39248
MLOC	MLOC_63089.4	2314	2e-24	984 - 1043	100	60 / 60	plus	ABC39248
JLOC1	JLOC1_41313.1	3762	8e-25	2835 - 2894	100	60 / 60	minus
JLOC1	JLOC1_41312.5	4151	8e-25	987 - 1046	100	60 / 60	plus
JLOC1	JLOC1_41312.4	4407	8e-25	987 - 1046	100	60 / 60	plus
JLOC1	JLOC1_41312.3	4622	8e-25	987 - 1046	100	60 / 60	plus
JLOC1	JLOC1_41312.2	4113	8e-25	987 - 1046	100	60 / 60	plus
JLOC1	JLOC1_41312.1	3860	8e-25	987 - 1046	100	60 / 60	plus
Harvest35	U35_22829	1130	3e-25	1055 - 1114	100	60 / 60	plus

Contig Sequence (1130 bp)

>U35_22829 1130 Hv_44K_v2
GCCCCAAGACCCGCCCCATAATCCCAAGTCTATCCCCAAGCCGCCCCGCAATCCCGCCCC
CCCAAACCCTAGTGATACCAACAACAACCACCCCCCACAGCCATCGCCGCCGCCGTCGCC
GCCGCCACTCTCTGGCGTCATCTCCGAAATTTTCGCCGTCCCCTCCGCCCCGCGATCCAA
CCGTCTCCTCAAGCCCTTCCGCAAGCAGTACCGACCCCGCCCTCGCTCCAACGTCAAGCC
CGCCAACAAGGACGACAAAGACAAGGCCAAGGCCAGGAAGCGCCGCCGGGACGATAGGGA
TGCGGCTGCTGAGCACGGGGAGAGGCGCTCCAGGACGGAGGTCACCGTCATCGACACCAG
CACCGACGGGTGGAAGGCCGCCAAGGTACTCGTCCGCAGGGGCGCCAACTGGAAGATCAG
CGACAGGAAGAACTCCGAGATCTCAGAAACTGAGGATCACAGCAAGGGCAAGAGGAGGGC
CGGCCTTGTTGCCAAGGTACTGAGAGATAAAAAGAAGGGGAAACACGCTGCCTCGCCGGG
AAACATCCATCCTGGTAGTGGAATTCTGATGAAGGTACCGGATGATGCTGCAGTTGATGC
ACCAAAAAGACCAAGAAGCTGTGAACCAGTACCAGTAGGCCAAAGTGCAACTATTCTTCA
GATAACAAGTTCAAGTACCTGTAGCCAGCCTTGAAGGTGGCTTTAAAACAGAAATGAAGG
CATGAAGCCAGGAATCGCATAGCAACATATTTTCATTACCTTGGGATTAACAAATTTAGC
AAAGAAGTTTGTGTTATCCTCTTCATCTGTTGATGTCTTCATTGGTCCCTACTAGATATA
ATGATTTGCATCATTCATGGTATCTTAAGCTGGAACCTGCAATAATTTCATGTTCAAAGA
TGAACTTTTGCAACTTCGTTCGATGCTAGCTAATGTGGCATTAGGTACGGGTTTGATCTA
TTTTAATGGATGGAGTAGATGATGTTTATACTGTTAGCTCAGTTATTGACTTATTGTACA
AGTTCAGTTGGTACTATCAGCAAACTGTTGCCTGTAAGTTATAAAGAATTGGGGGCAAAA
CGTTGTTACTTTTCGTGCGAGTTTATTTTGTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None