barSeed - Barley Seed Development Database

Probe CUST_28248_PI390587928

Source Contig U35_42973

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28248_PI390587928	Hv_44K_v2	CCTTGCCAAATGCAAATTATCTATACCACAAACGTTTGCATCGAAGATGCTTGCTCAATC	653	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68088.2	4019	2e-24	2113 - 2172	100	60 / 60	plus	ABC11854
MLOC	MLOC_68088.1	3946	2e-24	2026 - 2085	100	60 / 60	plus	ABC11854
JLOC1	JLOC1_45017.1	3860	8e-25	1889 - 1948	100	60 / 60	plus
Harvest21	ABC39048	713	3e-25	654 - 713	100	60 / 60	plus
Harvest35	U35_42973	713	3e-25	654 - 713	100	60 / 60	plus

Contig Sequence (713 bp)

>U35_42973 713 Hv_44K_v2
GCACGACTTCTTGGCTGCAGTATTGAAGATCTCAATTTAGTTTTGTCAAAGCGGCACATG
AAAGTTAATAATGAAAATATTGTCCAGAAGCTTACCCTTACACAGGCAACTGACACAAGA
GATGCTCTGGCTAAAGCCCTCTATGCCAGTTTGTTTGAGTGGCTTGTAGAACAAATTAAC
AAGTCCCTTTCAGTTGGCAAGCGTCGAACTGGGAGATCAATCAGTATTCTTGACATCTAC
GGCTTTGAGTCATTTGATAAGAACAGTTTTGAACAGTTCTGCATTAATTATGCCAATGAG
AGGCTACAACAACATTTCAATCGCCATCTGTTTAAGCTTGAGCAAGAGGAATATGTTGAG
GATGGCATTGACTGGGCTAAGGTTGAGTTTGAGGACAACCAGGACTGTTTGAATCTATTT
GAGAAAAAACCACTGGGGTTGTTGTCTCTACTGGATGAGGAATCTACATTCCCTAATGCC
ACAGACCTTACTTTTGCGAACAAGCTCAAGCAACATCTTGACACTAATTCTTGCTTCAGA
GGAGAAAGAGGCAAGGCTTTCGCTGTCCGTCACTATGCAGGAGAGGTGGCATATGACACA
TCAGGTTTTCTGGAGAAGAACAGAGATTTATTGCACATGGATTCAATTCAGTTCCTTGCC
AAATGCAAATTATCTATACCACAAACGTTTGCATCGAAGATGCTTGCTCAATC

Homology of Contig U35_42973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34710.1	996	3e-153	protein\|myosin-2 heavy chain, non muscle, putative, expressed
Brachypodium v1_2	Bradi3g29440.1	1191	1e-153
Arabidopsis v10	AT1G50360.1	1153	1e-129	\| Symbols: VIIIA, ATVIIIA \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:18650688-18657106 FORWARD LENGTH=1153