barSeed - Barley Seed Development Database

Probe CUST_28237_PI390587928

Source Contig U35_42978

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28237_PI390587928	Hv_44K_v2	CCCTTTTCCCTCCTGTTCTTGGTGATCTGAACAGCAAAAACAGTTTTATTAGGCAAAAAA	11	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.515	2.175	1.082	0.641	0.234	0.247
Raw	353.106	481.357	210.102	201.558	24.974	29.190

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16399.2	1585	7e-23	1455 - 1511	100	57 / 57	plus	ABC21330 ABC39053
Harvest21	ABC39053	581	3e-25	12 - 71	100	60 / 60	minus	ABC39053
Harvest35	U35_42978	581	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (581 bp)

>U35_42978 581 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCCTAATAAAACTGTTTTTGCTGTTCAGATCACCAAGAACAGG
AGGGAAAAGGGACGACAACGAAAGAACAAACAGCAGTTATTAGAGAAAAAGCCAGAAAGG
CGAGCAGTTTCTGAGAGCGTACGAAACATCCTTTTCTTCTTCCAGGGCGAAAGGCCACCA
ACTTCATCACAGGTCTCCATCGCCACTACAGATGAGATGAGCACGACAAATAGCAGCCCG
GCAGATTGGCACGGCATAGACCATGTTTGGACGGCCGCACGGATATGGATGCGCTTACAA
CGGAGCGCCAGCAGAGTGTGGCCATTGAGGGAGAAAGGACCTGAAGAAGCCACCGACACT
GTCAGTATAGCGTAGCCATCTGTGAAGCTGGGGAAGCAACCGTTGCCTTGAGAGCCAAGC
GTGAGAGAGCTGAAGAAGAAATCTTCTTCCTCCCTGGGAATCGCTCAACTCGTCGTCCCG
AGGGCGCCTCTCACAAATTTGAAATTTTGTTAGTTTGATTAGTGTCATGTTCAATAGGCG
GGGCTGCTTGTGCTTCTCACAACAAAAACAACTGTCAGGGA

Homology of Contig U35_42978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None