barSeed - Barley Seed Development Database

Probe CUST_28232_PI390587928

Source Contig U35_28689

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28232_PI390587928	Hv_44K_v2	AATTAATCTACTAATTAATTTCTAAAAGTGCCCATCGCGGTCTATTGGGCCTACTCCGGC	244	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67079.1	1167	7e-23	47 - 106	98	59 / 60	minus	ABC04383 ABC24951
Harvest21	ABC27694	555	3e-25	245 - 304	100	60 / 60	plus
Harvest35	U35_28689	555	3e-25	245 - 304	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_28689 555 Hv_44K_v2
GGTTTTTCTTTCTTTGTGTTCTTCTCGATCTCGAAATCGCTCAGTGCTGATAACGTGTTA
AAGTAAAACGAGATTGAATGGAAGTGAATGGACCAGCAGTCCTCTTTCTATTGATTCTCA
AGTATATATACATCTGAAAGAGGTGCGAAGAAGAGGTGTCTGTTCGGATGCAAACCTCGA
GAACAGGTGCCTGTTGACAATAGACACAAAGAAGAGACACTGTTCGGGTTGGACATATCC
ACTGAATTAATCTACTAATTAATTTCTAAAAGTGCCCATCGCGGTCTATTGGGCCTACTC
CGGCGTGCACACGGCGCTGGGGAATTCGCGGCTCATGGACAAGTACCGGCTCAACACCAA
GGACGAGGAGGACCGCAAGAACATGGTGTCCAAGGGCGCCGTCATCCTCAATGTCCTCCT
GCAGCACCTCATGCAGCTCGCCGCGCGCCACGGCCATGTTCCTCACCCTGTGCACCGTGA
AGGCCATCGACAACCACTGCGGCGTGTGCCTGCTGCCGCGCCGCCTGCAGTCGGTGTGGA
ACGGCGCCGCGTACC

Homology of Contig U35_28689 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None