barSeed - Barley Seed Development Database

Probe CUST_28231_PI390587928

Source Contig U35_42980

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28231_PI390587928	Hv_44K_v2	GAAACAACCTTGAAACAGGCTCACGCTCCGCTTTATAGATAACGCATAAACCAAAGTGCA	23	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14591.1	1405	2e-24	433 - 492	100	60 / 60	minus	ABC39056
MLOC	MLOC_14591.2	1489	2e-24	433 - 492	100	60 / 60	minus	ABC39056
JLOC1	JLOC1_9961.4	1451	8e-25	915 - 974	100	60 / 60	plus
JLOC1	JLOC1_9961.3	1458	8e-25	922 - 981	100	60 / 60	plus
JLOC1	JLOC1_9961.2	1363	8e-25	827 - 886	100	60 / 60	plus
JLOC1	JLOC1_9961.1	1373	8e-25	837 - 896	100	60 / 60	plus
Harvest21	ABC39056	571	3e-25	24 - 83	100	60 / 60	minus	ABC39056
Harvest35	U35_42980	571	3e-25	24 - 83	100	60 / 60	minus

Contig Sequence (571 bp)

>U35_42980 571 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGGGCCTGCACTTTGGTTTATGCGTTATCTATAAAGCGGAGCG
TGAGCCTGTTTCAAGGTTGTTTCATTTCTTCTAATATCTCCAAACAAGACACAATGTACA
AGAGCTGTCCTAGTTCGCGGCCTCAGCAGTGACTGCACTTGATGCATGTCAGAAAGATTA
ACAAAATCACCATGCCAGCTGACTGAGTCAGCATAGCTGTACTGCACACGATATGCGCCC
ATTCGCTCTACTGCTTTTCCGCCTGTAGATCGTTTGCTCCGCTTTTGCTTGCGGCCAGCT
GAAGTTGCTCAATTTGTTGCCCCAATCTCAGCTGTACACTGACTTGGCATATGCTGGCAT
CAGCCTTCATGATCTCTTCCTCGGCTTTTTTTGCGATGTGCATTGCATCCCTTTAAAATT
TAGTAGTTGGGGACGGACACGGGGTTAGAATAATATAAACTGGAGCTTCGGGCTGGAGGA
TAAAGGTTGATTACCGAATCAAAATTTCTGGAGACATTGAAACTTGGACCTGAAGCAACA
CCCGTCCTTGCAAGTAATGCAGTATCAGGTG

Homology of Contig U35_42980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None