barSeed - Barley Seed Development Database

Probe CUST_28220_PI390587928

Source Contig U35_28695

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28220_PI390587928	Hv_44K_v2	AGGAACAATCTCATTTGAAGCTTGCCGGTCTTTCATCATCAGAAAATAAGGACTCCGTAC	671	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.483	1.223	1.564	0.866	0.713	0.697
Raw	59.824	64.215	84.931	63.522	21.858	22.962

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55862.1	4558	2e-24	2363 - 2422	100	60 / 60	minus	ABC11791
MLOC	MLOC_55862.2	4410	2e-24	2330 - 2389	100	60 / 60	minus	ABC11791
JLOC1	JLOC1_36073.1	4534	8e-25	2076 - 2135	100	60 / 60	plus
Harvest21	ABC27700	731	3e-25	672 - 731	100	60 / 60	plus
Harvest35	U35_28695	731	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_28695 731 Hv_44K_v2
GGTGGCATCCTCGCAATCTCTTAATAAATCAAAATCAGAGGCGCATAGTAATTCACTTTC
AAGTTCTATAATTTCGAATTCAAGACTACCTTCTTCATGGAACGATGATACAAGTGCAGT
ACTGAAAATTACTGAAGGACGGCAAGTATCAGAACGAGATACTTTGTCCAAAACCTTGAA
GCCATATAGACCTGGTATTGCAAAGGAAACTCAAGCTGTGACATCACTGGAGTCTTCGTT
GGACATAGACTTTTCTACAATACCTTCAGCCTGGAATGATGATGAAGTTGTAGCATCAGA
TGAGACCTCGAAAGGAAGTGAGGAAAAGCAAGTTGTAAATGAAAAGTTTATTCCTTCAGC
ATCCTCAAAACCAATGGAATCGGGCCAGATAGGGTCTAAGTCATCAACATCACCAAAGAA
TGGCGAAGTTGTAAACAGTTCCAAGCAAAATCTTGCAGATTGTGTGCCACATTCAGCAAT
ATCTTGTTCTGTTCTAAAGAGGGACGATGTTGAGAGTAGACCTGGGGACACAGAAGTCGA
GAAGTTGTCTGTTGGGGTAACTTCAGTAACTTTAGATAGCAAAGATACAGTTCATAGCAT
GGCAGAAAACCAACAGCTGGGTGCAGTTCCCAGCACTTCCGTTGTGGTGCCTTTGAGTCA
AAGTTTGAACAAGGAACAATCTCATTTGAAGCTTGCCGGTCTTTCATCATCAGAAAATAA
GGACTCCGTAC

Homology of Contig U35_28695 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01190.2	1097	2e-60	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi4g45240.1	1161	2e-81
Arabidopsis v10	None