barSeed - Barley Seed Development Database

Probe CUST_28219_PI390587928

Source Contig U35_28696

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28219_PI390587928	Hv_44K_v2	TCTACATGCCTTCACACTAGTCATAATACGTACTGGAGGACATGATTTCATGCACACGCC	227	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65304.2	1331	7e-23	60 - 119	98	59 / 60	minus	ABC03023 ABC03024 ABC03025
Harvest21	ABC27701	592	3e-25	228 - 287	100	60 / 60	plus
Harvest35	U35_28696	592	3e-25	228 - 287	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_28696 592 Hv_44K_v2
GCGGCTGCTTCCCCATCTACCTCACCATCTACGGCACCTCCAGCGCCGCCGACTACGACT
CCCTCGGCTGCCTCAAGAAGTTCAACGACCTCTCCACGTACCACAACAGCCTGCTCCAGG
CCAAGGTGTCCACCCTCCAGGCCAAGTACAAGTCCGCCCGCATCATGTACGCCGACTTCT
ACGCCGGCGTCTACGACATGGTCCGGAGCCCCAGCAAATACGGTACGTCTACATGCCTTC
ACACTAGTCATAATACGTACTGGAGGACATGATTTCATGCACACGCCGGCGGCTAGTCTC
GCCGTGGCGGCACTGTGGGTGGGTGGATTTCAGTTTTCAAACTCGCCGTGGACCACGTCC
TCCGTTGTCGGCGCAGAGCGTTTCTCGTTTTTGGACGCGCCCGTCACGCTCTGTCCTGGC
AGTGCGGCAGCACCAGCACGGGACATGCATGCATGGTGGCGGGATTAAATGAAGGATTAT
TCGGCGTTTAAGGCTCATGCAGTGCCGCACTGCTGCACCACACCACTTGCTCTGCACTGC
TGGCCGGTAGCGTGGTCACCACCACATGCCCGTCCGTGCGTCCGTGCGTGCG

Homology of Contig U35_28696 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None