barSeed - Barley Seed Development Database

Probe CUST_28214_PI390587928

Source Contig U35_30440

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28214_PI390587928	Hv_44K_v2	CCTAGGCCGCTCTCCCCCGCTCCGCCTCGGCGTCCATGGCGACGGACGCCTCCCCCCCTC	43	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14288.1	2209	2e-24	1396 - 1455	100	60 / 60	minus	ABC15511
JLOC1	JLOC1_9753.1	1616	8e-25	71 - 130	100	60 / 60	plus
Harvest21	ABC30357	243	3e-25	44 - 103	100	60 / 60	plus
Harvest35	U35_30440	243	3e-25	44 - 103	100	60 / 60	plus

Contig Sequence (243 bp)

>U35_30440 243 Hv_44K_v2
CTCCCGAACTCCACCAAAGAAAAACTCTGCGCAGGGGGAAAGCCCTAGGCCGCTCTCCCC
CGCTCCGCCTCGGCGTCCATGGCGACGGACGCCTCCCCCCCTCCGGCGCGCAAGAGCCCG
GGGCCTCAGCCGGCGTCGGACCCCCCGGAAGACGACGCCCCGCCGCTGCCGGCGGGGTAC
ATCTTCATCTGCAGCGGCGAGACCAGGCCCGAGTGCTTCAGGTACAGGGTGCTGGGCCTT
CCG

Homology of Contig U35_30440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None