barSeed - Barley Seed Development Database

Probe CUST_28212_PI390587928

Source Contig U35_30442

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28212_PI390587928	Hv_44K_v2	ACGACACCTACTGGTTCCGCCGCCTCGTGCTCAGCAACGCCTGCCCTCCTCCCGCGCCTC	130	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365161	3542	2e-24	2231 - 2290	100	60 / 60	minus	ABC11892 ABC15187 ABC19934
MLOC	MLOC_7657.1	1413	2e-24	370 - 429	100	60 / 60	plus	ABC15187
JLOC1	JLOC1_5059.1	1202	8e-25	152 - 211	100	60 / 60	plus
Harvest21	ABC30361	190	3e-25	131 - 190	100	60 / 60	plus
Harvest35	U35_30442	190	3e-25	131 - 190	100	60 / 60	plus

Contig Sequence (190 bp)

>U35_30442 190 Hv_44K_v2
GCCGATCCCGTCGCGAAACCCAACGAGCGTGCGCGCACGCACGCTCCGTTGTCCCCCTCT
CTCTCCCCACACAAAATGGAGCGGCAGCCTCGGCCGCAGCTCGCCGTGGCGGAGGAGGCC
ATCGCGCTCTACGACACCTACTGGTTCCGCCGCCTCGTGCTCAGCAACGCCTGCCCTCCT
CCCGCGCCTC

Homology of Contig U35_30442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None