barSeed - Barley Seed Development Database

Probe CUST_28209_PI390587928

Source Contig U35_30444

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28209_PI390587928	Hv_44K_v2	AGAACATTCAGGAGAGGGACTTGGAAGTTGGTCGGAACGTCGGAAACGCGGTCCTTCGCT	292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370897	983	2e-24	309 - 368	100	60 / 60	plus	ABC18506
MLOC	MLOC_15411.1	905	2e-24	348 - 407	100	60 / 60	plus	ABC18506
JLOC1	JLOC1_10567.1	1024	8e-25	355 - 414	100	60 / 60	plus
Harvest21	ABC30364	451	3e-25	293 - 352	100	60 / 60	plus
Harvest21	ABC18506	951	1e-23	334 - 393	98	59 / 60	plus	ABC18506
Harvest35	U35_30444	451	3e-25	293 - 352	100	60 / 60	plus
Harvest35	U35_23297	951	1e-23	334 - 393	98	59 / 60	plus

Contig Sequence (451 bp)

>U35_30444 451 Hv_44K_v2
CCCCTCCCCACGACTCAAACCGATCCCCTTCCCCTTCCCCTTCCCCGAATCCGCTCGCCG
CCGCCGTAAAACCCTCTCCGCTCCGGCTCCGCCCTCCGCCAACCCCGCCGCCGGGGAGAG
ATGGTGCTGTGGGAGATCACGGCCATCACGGCCTACTTCCTCGGCCTCCGCCGCACCTAC
CGCCTCGCGCTCCGCGGCCAGCGCCGCCTCATCGGCCCCAACCACCCCAAGCTCCGCGAC
TTCGTCTACAGGCGGACACGTTCTATATTCGATGTCGCAGTCTCAGTGCACAAGAACATT
CAGGAGAGGGACTTGGAAGTTGGTCGGAACGTCGGAAACGCGGTCCTTCGCTGGCTCGAC
CGCATGAAGCCATCGGCACAGATCCGCCCCCACCCTCCAGGCCCGCCAGGCGGCAGCCCG
GAGCAACTCAGGCACCTCTCGACCATGAACA

Homology of Contig U35_30444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03560.1	193	3e-53	protein\|expressed protein
Brachypodium v1_2	Bradi3g02690.1	194	5e-58
Arabidopsis v10	None