barSeed - Barley Seed Development Database

Probe CUST_2819_PI390587928

Source Contig U35_10851

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2819_PI390587928	Hv_44K_v2	CTACTAGTGATATTGTGCTCCCTTTTTGCCCTGGCAAATTGTTGCATTTCCTACAAAAAA	75	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19217.4	1780	9e-22	1666 - 1720	100	55 / 55	plus	ABC06274
MLOC	MLOC_19217.1	2269	9e-22	2155 - 2209	100	55 / 55	plus	ABC06274
JLOC1	JLOC1_13333.1	1897	5e-22	1709 - 1763	100	55 / 55	plus
Harvest21	ABC37663	146	3e-25	12 - 71	100	60 / 60	minus
Harvest21	ABC37662	139	3e-25	69 - 128	100	60 / 60	plus
Harvest21	ABC06274	1992	1e-23	1924 - 1983	98	59 / 60	plus	ABC06274
Harvest35	U35_10851	146	3e-25	76 - 135	100	60 / 60	plus
Harvest35	U35_2415	1994	3e-25	1924 - 1983	100	60 / 60	plus

Contig Sequence (146 bp)

>U35_10851 146 Hv_44K_v2
GCACGAGGGCCACGCCACGCCACGCAGTTTTCTCAGCAGGATAGCAGTAGCTACTGTATT
GCTGCTACTAGTCTACTACTAGTGATATTGTGCTCCCTTTTTGCCCTGGCAAATTGTTGC
ATTTCCTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_10851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None