- Probe CUST_2817_PI390587928
- Source Contig U35_10854
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2817_PI390587928 | Hv_44K_v2 | ATGGAGTGTTCGTCGTTGCTTGCTTGCTCAAGCGTGATTGGTTATGTGTGGACGTTTTTT | 288 | GeneList: orangered4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.258 | 5.196 | 1.190 | 0.797 | 0.177 | 0.306 |
| Raw | 168.135 | 351.868 | 63.741 | 74.860 | 4.179 | 9.849 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15717.1 | 460 | 2e-24 | 185 - 244 | 100 | 60 / 60 | plus | ABC23146 |
| JLOC1 | JLOC1_10801.1 | 428 | 8e-25 | 216 - 275 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23146 | 417 | 3e-25 | 70 - 129 | 100 | 60 / 60 | minus | ABC23146 |
| Harvest35 | U35_10854 | 417 | 3e-25 | 289 - 348 | 100 | 60 / 60 | plus |
Contig Sequence (417 bp)
>U35_10854 417 Hv_44K_v2 CTCCGGGCGCGCATCCGCCTCTGCTTCGGCTGGGCCGCGCCCGCGCTCCGGCGCCGCTCC TCCCCACGCCGTGGCGGCGTCCACGGCTTCCGCTTCGGCCGCCTCCCCCGCGTCGTGAAG GCGCCGCCGGCCAACGCCGCGTCCGCCTGCTTCTGGTAGCCGGCCGGCCAACGCGTCAGC GCACTTGCTGGCTTCCAAGTCAAGCTCTTGATCGCTTATTAGGTAAAAGCAATTAGCCGG TGAATGGTAGCAAGTTAGCGGTGAGTTCTGGAGCTCTACTCCGGCTCCATGGAGTGTTCG TCGTTGCTTGCTTGCTCAAGCGTGATTGGTTATGTGTGGACGTTTTTTTCCTTCTTTTTG GTGTCTGATCACTCTGAATGAATGAATTAGTTATGTATCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_10854 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |