barSeed - Barley Seed Development Database

Probe CUST_28179_PI390587928

Source Contig U35_30452

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28179_PI390587928	Hv_44K_v2	CACATTCGGGATGTCTACTGGTCTGCAAGATGATGGTAACTTTGCAGGAAGCTTTGATCA	379	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54689.5	6169	2e-24	5459 - 5518	100	60 / 60	plus	ABC33223
MLOC	MLOC_54689.6	6444	2e-24	5447 - 5506	100	60 / 60	plus	ABC33223
MLOC	MLOC_54689.7	6029	2e-24	5436 - 5495	100	60 / 60	plus	ABC33223
MLOC	MLOC_54689.1	5844	2e-24	5371 - 5430	100	60 / 60	plus	ABC33223
MLOC	MLOC_54689.2	5857	2e-24	5371 - 5430	100	60 / 60	plus	ABC33223
MLOC	MLOC_54689.3	6122	2e-24	5370 - 5429	100	60 / 60	plus	ABC33223
JLOC1	JLOC1_35212.2	6120	8e-25	5112 - 5171	100	60 / 60	plus
JLOC1	JLOC1_35212.1	6279	8e-25	5284 - 5343	100	60 / 60	plus
Harvest21	ABC30372	446	3e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_30452	446	3e-25	380 - 439	100	60 / 60	plus

Contig Sequence (446 bp)

>U35_30452 446 Hv_44K_v2
TAAACATGGGAAGCCTTATGCCAGGAAATAATCAGAAATTGTCCATAAGAAGGGCACAAG
TTAAGAATTCTGAATACCTTGATCAAGCTGGAACATCAGTGAATGGGTATTATGTTCAGA
ACCAACCTCCAGGGGAGGCAAACATTAATTTCGGTCATATGACTGAATTTTCCATGTCAG
AGGCTGATGGTGTGGATGCTTCGGAGTTATTGGGTTGGGATTTTACCCAAGGAAACGGAT
ATGCTGCTGGTCCTGATCATGGCACTAATTCCCAGTGGAATGACACTAGTGGTGGCAGCA
TTGTGGCCGAGGAATATGAACCACAGACTTATTTCTCATTCACAGAGTTGCTCGAAGCTG
ATGATACACAGTTTGATAACACATTCGGGATGTCTACTGGTCTGCAAGATGATGGTAACT
TTGCAGGAAGCTTTGATCAGCAAGGG

Homology of Contig U35_30452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05130.2	1885	4e-59	protein\|PHD-finger family protein, expressed
Brachypodium v1_2	Bradi4g42780.1	1885	2e-77
Arabidopsis v10	None