barSeed - Barley Seed Development Database

Probe CUST_28173_PI390587928

Source Contig U35_16162

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28173_PI390587928	Hv_44K_v2	CACTGTGTTGTATCAACATTGGATTGTCGGCGTCTCATCATGGCAACTTTTTCTGAGTAT	696	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50118.1	1051	3e-22	16 - 71	100	56 / 56	minus	ABC49714
JLOC1	JLOC1_32012.1	1112	1e-22	949 - 1004	100	56 / 56	plus
Harvest35	U35_16162	797	3e-25	697 - 756	100	60 / 60	plus

Contig Sequence (797 bp)

>U35_16162 797 Hv_44K_v2
AGACACCCATATTTCCACCAGTAGTGAAATCATCAGCACTTCCCTTGAAGTCCCGCATCA
CTTTTCCAGTGCGTACATCGAAGATATTTAGTAGGACCCTATGTGAGCGGCCGCTGGATG
CTATTAAAAAGGCTATAACATCCGGTTTCTTCCACCACTCTGCTCGGTTGCAGAAGAATG
GCTCATATAGAACTGTCAAGAATCCTCAGACGGTCTTTATCCACCCTAGTTCAGGATTAG
CACAGCTACTTCCCCGTTGGGTAGTATACCACGAACTAGTTCTCACGACTAAAGAGTACA
TGCGTCAGGTGACGGAACTGAAGCCTGAATGGCTGGTGGAAATTGCCCCGCACTACTACC
AACTAAAAGATGTGGACGACGCTGCTTCGAAGAAGCTGCCCAAGGGCCAAGGACGAGCTG
CATTGTAGTCTGCCTGGGCTCATGAAGCCAGCCTTTGGATAGATTAGATGTTGTGTAAAC
AGTTTAGTTTCAAACATCGGGATCACATGGCTTTTTTCTTTCTACTCTTGTTTTAGATTA
CATCCTATCACTCACCATGGTCCTGTTAACATGATTGATCGTTCTTGTATAAGTTTGAGG
GTGTCGGTATAGCCGTAGATAGTTGGGCGCAACGCAGCATTGATGCTGAGACCTCGGTCC
TAAGCCATATTCGGTTATCAAACATACAGTGCCTACCACTGTGTTGTATCAACATTGGAT
TGTCGGCGTCTCATCATGGCAACTTTTTCTGAGTATAGAGCGGCCGCTCGAGCATCATCT
GATGGGCCCAATTCGCC

Homology of Contig U35_16162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g24760.1	1052	1e-59	protein\|ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g61220.1	1052	1e-61
Arabidopsis v10	AT1G32490.1	1044	6e-52	\| Symbols: EMB2733, ESP3 \| RNA helicase family protein \| chr1:11742356-11749286 REVERSE LENGTH=1044