barSeed - Barley Seed Development Database

Probe CUST_28169_PI390587928

Source Contig U35_16164

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28169_PI390587928	Hv_44K_v2	ATACATTGATCATGGTTATGGAGATCAAAACGTGTGGTTGGAATGCTGGTGATCAAAAAA	1272	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17692.1	1835	9e-22	1754 - 1808	100	55 / 55	plus	ABC00294 ABC00408 ABC00741
JLOC1	JLOC1_12220.2	1872	5e-22	1714 - 1768	100	55 / 55	plus
JLOC1	JLOC1_12220.1	1918	5e-22	1760 - 1814	100	55 / 55	plus
Harvest21	ABC00741	1856	3e-25	1786 - 1845	100	60 / 60	plus	ABC00741
Harvest21	ABC39029	547	2e-22	32 - 86	100	55 / 55	minus
Harvest35	U35_16164	1343	3e-25	1273 - 1332	100	60 / 60	plus

Contig Sequence (1343 bp)

>U35_16164 1343 Hv_44K_v2
ACAGATGATAAGTATTTTGCTAGGCTTGGAAAGAATGTTATATCTGTCTATGATACTGAG
ACGTTCGCTCTTATTGATAAGAAGTCCTTGAAGGTAGAAAATGTGGTTGACTTCAGTTGG
TCTCCCACTGATCCTATCATATCACTCTTTGTGCCTGAATTGGGTGGTGGAAATCAGCCT
GCCAGGGTGAGTCTTGTGCAAATTCCGGGCAAGGAGGAGATTCGACAGAAAAACCTTTTC
AGTGTTAGCGACTGCAAAATGTACTGGCAGAACAATGGAGAATATCTGGCTGTCCAGGTA
GACAGGTACACAAAAACAAAGAAGAGCATTTATACTGGGTTCGAGCTGTTCAGAATCAAG
GAACGTGACATCCCAATTGAGGTCTTTGAACTGGACAACAAGAATGACAAGATAATTGCC
TTCGCATGGGAGCCTAAAGGTCACCGCTTTGCTGTTATTCATGGTGATGGGCCTAAGCCT
GATATAAGTTTCTACACCATGAAAGCAGTCAACAATAATGTTAGTCGTGTGTCCAAGCTC
ACCACACTCAAGGGCAAGCAGGCCAATGCATTGTTCTGGTCTCCTGCTGGGCGTTTCATT
GTTCTGGCAGGGTTGAAGGGTTTCAATGGCCAGCTGGAGTTCTTCAACGTTGATGATCTT
GAGACCATGGCAACAGGAGAACATTTTATGGCGACCGACATCATGTGGGATCCTACTGGA
AGATACCTCGCAACCGCAGTTACCTCGGTTCATGAGATGGAAAATGGTTTCCACATCTGG
TCCTTCAATGGCAAGCTAATTTACAAGATCTCAAAAGATCACTTCTATCAGTTCCAATGG
CGCCCAAGGCCACCGTCGCTACTTACTCCTGAGAAGGAGGAGGACATCTCGAAGAACCTC
AAGCGGTACAGCAAGAAGTACGAACAAGAGGACCAGGATGTGAACGCCCATTTGGACTTG
GAGGAGCGCAAGAGACGGATGCAGCTTCAAGAGGTGTGGGAATCATGGGTCACCAAGTGG
AAGCAGCTGCACGAGGAGGAGCGAGCATTCAGGATGCAACTCAGAGGCGGGGAGGACAGT
GACAAGGAAGAAGAGGCGGAGTACAAGGAGATTGAGGCCGAGGAGCTGGTTGATGTCACA
AAGGAAACCGTTGCCTTCGACCTGGACCAGGAGTGAAAGTCTGCTGAATGTTCATTTTCC
GCTTGTCGTGTAAATTGCTGTCGTTTTGCATGACAGGCTCCTTTGATCTTTCTAGTAGTG
CACTTTTAATAAATACATTGATCATGGTTATGGAGATCAAAACGTGTGGTTGGAATGCTG
GTGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g41960.1	720	protein\|eukaryotic translation initiation factor 3 subunit B, putative, expressed
Brachypodium v1_2	Bradi1g13850.1	719
Arabidopsis v10	AT5G27640.2	738	\| Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1 \| translation initiation factor 3B1 \| chr5:9781207-9784759 REVERSE LENGTH=738