barSeed - Barley Seed Development Database

Probe CUST_28157_PI390587928

Source Contig U35_42433

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28157_PI390587928	Hv_44K_v2	AGTGACAGGGAAACTAGTACTTCTGGTGATATATCTTGAGCTACCCTGTTTTTGGTTAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67900.6	1612	7e-23	1447 - 1503	100	57 / 57	plus	ABC38101
MLOC	MLOC_67900.4	4962	7e-23	1760 - 1816	100	57 / 57	plus	ABC08248 ABC18711 ABC38101
MLOC	MLOC_67900.2	5053	7e-23	1774 - 1830	100	57 / 57	plus	ABC08248 ABC38101
MLOC	MLOC_67900.5	4814	7e-23	1640 - 1696	100	57 / 57	plus	ABC08248 ABC38101
JLOC1	JLOC1_44874.2	5210	4e-23	1587 - 1643	100	57 / 57	plus
Harvest21	ABC38101	647	3e-25	15 - 74	100	60 / 60	minus	ABC38101
Harvest35	U35_42433	647	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (647 bp)

>U35_42433 647 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACCAAAAACAGGGTAGCTCAAGATATATCACCAGAAGTACTA
GTTTCCCTGTCACTACCGAAAACAGGGTACAACATAAACTCTTCTGCTGACATAAGAGAG
TTAGCCAGGTCTAGCAAAGACAGGTATGCAAGCTATGGATCAGCTGCTACAGAAGAACCA
TCACCACCTTGATGAGCTTCAGTTTGTGCCCTTTTTTGTTTGTCGCCGTTCAGCGGATGA
CAAGGATCAAGCATACAAGCTTTCATCTCACTAACTTCTGAAGACAAGACTGAGAAGAGA
ACCTCCATTGTGTAAAGTCTCTTCTCAATTGCATCGAATCCTTTAACAACTTTCTCATGC
AACCCCTCTATCAGTTTTGAAAGTTGAGCATTGCTGGCAACCGTTGAATCAGGACTAACT
GGTTGCGGTGGCTGATGAGAATAGGACATTGGCTGCTGGTGTTGCACCTCTATAACTTCA
TGCTCAGCTGAGGCAGCACGTTGTTCACGGTTCAAGCTTGCAAGGTACAGGGTGTACTTC
TTGAGGCAGCATTTGGTGTCAATGTTTGTAGGTTCACATTTCAGATGGCGGAGAAGGCAA
AATATATAAGGTGCATATGGTAATGCATGATTAAGAGTATCAATGGC

Homology of Contig U35_42433 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None