barSeed - Barley Seed Development Database

Probe CUST_28154_PI390587928

Source Contig U35_42435

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28154_PI390587928	Hv_44K_v2	ATACAATGCACTGGTGAATGGGCTTTGTCGGGCAAGAAATTTTAAGGCTGCCGAATGCAT	524	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.363	1.046	1.479	1.043	0.513	0.458
Raw	18.186	20.027	27.546	31.119	3.342	3.426

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61499.1	2223	2e-24	1217 - 1276	100	60 / 60	plus	ABC38104
JLOC1	JLOC1_40193.1	651	8e-25	433 - 492	100	60 / 60	plus
Harvest21	ABC38103	694	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_42435	694	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_42435 694 Hv_44K_v2
GCGCCCGTGTGTTTCGGCCTCATGAGCCGGCTCCCCACTACTCCCGAAGCATACACTTTC
TACCTGCAGCTGCTTGACGCCGGCATGGCCCCGGAGATCAGGCAGTTCAACGTGCTGATG
CGAGATTTCGTTAGATTTGGAGACCTTGCCAGTGCACGCAAAGTGTTCGACGAAATGCGA
ACCAGGAGCGTGCAGCCGACTGTGGTCAGCTTCAACACCTTGATTACAGGCATGTGTAGA
GCGCGCGATCTGGACGGTGTAGACGGCCTGTACAAGGGAATGATCCAGATGGGTGTCACA
CCTGATGTCTACACCTACAGCGCTCTGATAAAGGGTTTGTCCAGTTCAGGGAGGATGGAA
GATGCAACAAAGATGTTCGATGAAATGCGCGAAAGAGGCGTGAAACCCAATGCCATCGTG
TTCACAACATTGATAGATGCACATTGTAAGGATGGGGATGTGAAGGCTGGAATGGACTTG
TACCAGGACATGAGGGCAAGGGGTGTCATGCCAGATTTGGTGGCATACAATGCACTGGTG
AATGGGCTTTGTCGGGCAAGAAATTTTAAGGCTGCCGAATGCATCGTGGAAGAGATGAGG
AGCATAGGTCTGAAGCCAGATAAGGTGACTTACACCACCCTCATTGATGGTTGCTGCAAG
GACGGCAAGCTAGACACGGCGATGGATATTAAGC

Homology of Contig U35_42435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38930.1	610	2e-99	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi5g12557.1	562	3e-99
Arabidopsis v10	AT1G09680.1	607	3e-63	Pentatricopeptide repeat (PPR) superfamily protein \| chr1:3134107-3135930 REVERSE LENGTH=607