barSeed - Barley Seed Development Database

Probe CUST_28152_PI390587928

Source Contig U35_42436

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28152_PI390587928	Hv_44K_v2	GGAAAGCCTACATGGTACATGGTCTTTTGGTTCTGTAATTTTGCTTCTCTTATTAGTAAA	53	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61499.1	2223	2e-24	2064 - 2123	100	60 / 60	plus	ABC38104
Harvest21	ABC38104	378	3e-25	54 - 113	100	60 / 60	minus	ABC38104
Harvest35	U35_42436	378	3e-25	54 - 113	100	60 / 60	minus

Contig Sequence (378 bp)

>U35_42436 378 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAAGTTTCAAGTGAACATCTGTCACCATCTTATTTATTTACTA
ATAAGAGAAGCAAAATTACAGAACCAAAAGACCATGTACCATGTAGGCTTTCCCCATGCT
ACGCTGGGAAGTATGTATCCCTCGTCGAGGAGTGGAGTAGCAATATTCGTCTGCCTAAAC
TTGCAGAGCCTAATCATATTGCATCCTCCCATCTCGGAGACCAATGGTTCTTCACTGGTG
AGGAAGTACTCAAAAGATGCCTTTACGCAAAAATCTTATCTATCGGGGTAGCTCTTGGCT
GGCTTCTTCTTGACAAGTTCGCTGATCAGCGAAGTATAAACGCCAAAATCTGGCACCATT
CCTTTTGCACTTTTCAGC

Homology of Contig U35_42436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None