barSeed - Barley Seed Development Database

Probe CUST_28145_PI390587928

Source Contig U35_28146

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28145_PI390587928	Hv_44K_v2	AAAGTATCGAGCTCCCAACACCTTCTTCCTTTTTCATCGAGGGCATCAAGAAGTTCGAGA	313	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.015	5.664	1.420	0.674	0.143	0.156
Raw	1413.622	1484.310	305.187	248.246	17.158	20.642

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC00954	894	3e-25	541 - 600	100	60 / 60	minus
Harvest35	U35_28146	656	3e-25	314 - 373	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_28146 656 Hv_44K_v2
TGCAGGATTCGGCACNGGGGGGCATCCTCGNCGTCTGCGACGAGCCCCTCGTGTCCGTCG
ACTTCAGGTGCTCCGACGTCTCCTCCACCATCGACGCGTCGCTCAGCATGGTCATGGGAG
ACGACATGGTCAAGGTCATTGCATGGTACGACAACGAGTGGGGTTACTCCCAGAGGGTCG
TCGACCTCGCCGACATCGTCGCCAACCAATGGAAGTGAACGCCCCCCACAGCGGCATTGC
CCTGTCAAGTGACTCCTCTCGAAATTTTCCCCAGCCGTCGTCACGGATGATCGATTCTTT
GTAATGAGAATTCAAAGTATCGAGCTCCCAACACCTTCTTCCTTTTTCATCGAGGGCATC
AAGAAGTTCGAGACCCTGTCTTACTTGCCACCACTCAGCACGGAGGCCCTCCTTAAGCAG
GTCGACTACCTGATCCGCTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGGTTC
ATCTTCCGTGAGCACAACGCATCTCCTGGGTACTACGATGGCCGGTACTGGACAATGTGG
AAGCTGCCTATGTTCGGATGCACCGACGCCACACAGGTGCTCAACGAGGTGGAGGAGGTC
AAGAAGGAGTACCCTGACGCGTATGTCCGCATCATCGGATTCGACAACATGCGTCA

Homology of Contig U35_28146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19470.1	170	2e-60	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08800.1	175	3e-66
Arabidopsis v10	None