barSeed - Barley Seed Development Database

Probe CUST_28134_PI390587928

Source Contig U35_16172

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28134_PI390587928	Hv_44K_v2	GTAATATAACACCGCAATTGATGTCAAGAAAATGGTGTCAGAATTCTGGATGACCTAAAA	1985	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.062	1.082	1.295	1.316	0.672	0.698
Raw	1933.750	3072.042	3241.090	4991.350	922.174	1044.268

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369575	2101	7e-23	2040 - 2096	100	57 / 57	plus	ABC05862
MLOC	AK365905	2075	7e-23	1899 - 1955	100	57 / 57	plus	ABC05862
JLOC1	JLOC1_5473.1	1875	4e-23	1651 - 1707	100	57 / 57	plus
Harvest21	ABC05862	1754	1e-23	1581 - 1637	100	57 / 57	plus	ABC05862
Harvest35	U35_16172	2156	3e-25	1986 - 2045	100	60 / 60	plus

Contig Sequence (2156 bp)

>U35_16172 2156 Hv_44K_v2
GTGCACCGCACTTCTCCACCCACCACCTACCTTCCCCCGTGTTCCCCTCCCCCCTCAAAA
CCTATCGCCGCAGACCGTCCACCCACCGACGAGCGATTGCGGCCGATTGATCCGCGGGGC
GAGGCGGAGGCGGAGGCGGAGTCGGTGGTGGCGGCGGCGGAGGGAGCACGCCAGATCCGG
CCGCGGCGGCGATGATGAAGACGCTGCTGCCGCAGAGCCAGCTGCGGCGCACGGCGCCGC
GCTCCTCCGTCGGCGGCGTCGAGGGCGCGGGGGCCCCCGACGGGGTCGGCGCGGGAGCGG
GCGCGGGGTCGGGCGGGCGGACGGCCTCCTCCTCCACCTTCTGGTTCCTGCTGCACGCGG
TCTGCTGCCTCATCTCGCTCTTCCTCGGCTTCCGCTTCTCCAGGCTGCTCTTCTTCCTGC
TCTTCTCCAGCAGCGCGCTCTACGCCGCCACCTCCAACAACAAGTCGGCCGTGCTCCGCG
CCATCACCACCACCACGACGACCACGACGACCACCACCACCACCACCAACACCTTCACCC
TCTCCTTCGCCGCCGCGGGCAACCCGCCGCCGGCCAACCCGGACAACCTCACAGCCGCCG
CGCTCGAGGAGGCCGCGGGGAGCACGCAGAGCCACGTCGTCGTCGGCCGACACGGGATTC
GGATCCGCCCCTGGCCGCACCCCGACCCCGTCGAGGTCATGCGCGCGCACCGGATCATGG
AGCGCGTGCAGGAGGAGCAGCGCCGCTGGTACGGCGTCAGGGAGCCCCGCCAGGTGCTCG
TCGTCACCCCGACCTACTCGCGCGCCTTCCAGGCGCTCCACCTCACCGGCCTCCTCCACT
CGCTCCGCAACGTGCCCTACCCGCTAACCTGGATCGTCGTCGAGGCCGGCGGCGTCACCA
ACGCCACCGCGGCCCTCCTCGCGCGCTCCAGCCTCACCTTCGTCCACGTCCCCTTCCCGG
AAAAAATGCCCCTCGAATGGGCCGACCGCCACGCCACTGAGAACCGCATGCGCCTCCATG
CCTTACGGGTGATCCGGGAGAGGAAGATGGACGGTGTGGTTGTGTTTGCGGATGACAGCA
ACGTGCATAGCATGGAGCTGTTTGATGAGGTGCAGAAGGTCCAGTGGATGGCCGCCGTGT
CTGTGGGTATCCTTGCACACACCGGAACAGCAGAGCAGCCACGCCTTACCGAAGAGGACA
AGAAGAACATGCCACTTCCAGTCCAGGGTCCTGCCTGCAACTCTTCGGGGCATTTGGCTG
GATGGCACACATTCAACACGCTGCCGTTCTCTGGGAAGACTGCCACGGTGGTTGGCGAGG
CAGCACCGGTGCTACCCAGGGGTTTGGAATGGGCTGGGTTTGTAATGAACTCTAGGATGT
TGTGGAAGGAGGCAGAGGGCAAGCCTGATTGGGTGAAGGACCTTGATGCTGTGGGGGAGA
ATGGGGAGGAGATTGAAAATCCTCTTACTCTCTTGAATGATGCGTCCTATGTTGAGCCGT
TGGGGAACTGTGGGAAGAAGGTCCTACTCTGGTGGCTCCGTGTCGAAGCCCGGGCCGATA
GCAAGTTTCCACAAGGGTGGGTGATTGAGCCACCTTTGGAAGTCGTCGTTCCCGCCAAGC
GCACACCATGGCCAGAAGCCACCATGGATATTTCATCGGAGCTGTTAGACGCCAAGCAAG
AGCAGGAGGACAGGCAGCTGCCAAGGACCAACAACAGGTCGGCCCGGCCCCGAAGCACCA
CCACGAAACGGAAGGGCGACGTCCAGAACTGAGTCAGGATAAACAGATCATGTAATGTAA
ATCTCACATCATCTTACACCCGCGGTATCTGCAATAGGAGGCATGTCCGGTCGATCTAGT
GGGTATTGTGTTTATTTTTTTGTTTCCTGATGTTTTGCTCTGGTGGCAACGACGACGCCC
TCGTGCTGGGGATATGTCTTCTTTAGGAGACCGTTTCGTTGTCTGTAGCCCTACTTGTTG
TGCTTGTAATATAACACCGCAATTGATGTCAAGAAAATGGTGTCAGAATTCTGGATGACC
TAAAAAAAAAAAAAAAAAGTATTGTGTGATCAGTGTTTTCAGGCATAGTTTCCCTTNCCC
TTTAGGGCCTTGTACTGAAATTGGAATGTTTGTTTGTTTACCATTATCAAATTAAG

Homology of Contig U35_16172 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g47340.1	525	0.0	protein\|glycosyltransferase family 43 protein, putative, expressed
Brachypodium v1_2	Bradi1g33320.3	530	0.0
Arabidopsis v10	AT5G67230.1	492	3e-154	\| Symbols: IRX14-L, I14H \| Nucleotide-diphospho-sugar transferases superfamily protein \| chr5:26822506-26824181 FORWARD LENGTH=492