barSeed - Barley Seed Development Database

Probe CUST_28132_PI390587928

Source Contig U35_16173

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28132_PI390587928	Hv_44K_v2	CAGGTCATTGAAGAACAAAATTGAGAGCTCACAGGAGGCTGCACAGAAGGCTTCATCATT	649	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36620.2	1312	2e-24	718 - 777	100	60 / 60	plus	ABC05309
MLOC	MLOC_36620.3	1014	2e-24	661 - 720	100	60 / 60	plus	ABC05309
MLOC	MLOC_36620.1	1080	2e-24	798 - 857	100	60 / 60	plus	ABC05309
JLOC1	JLOC1_23603.1	1361	8e-25	720 - 779	100	60 / 60	plus
Harvest21	ABC05309	1283	3e-25	696 - 755	100	60 / 60	plus	ABC05309
Harvest35	U35_16173	1241	3e-25	650 - 709	100	60 / 60	plus

Contig Sequence (1241 bp)

>U35_16173 1241 Hv_44K_v2
GCTCGCACAACACCCGCTCGCTGCTTCCCTCGTCCTCAGCTCCGCCGAATCGCGTCGCCG
CCGGCCGAGAGGCCATTGGATTCGTGGCGTTGGCGAGCGTGGTCGCCAGCAGGAGAGGAG
GGACGGCGGCGGCGGCGACTGTTCGCGGGATGAGCTTCGGCGGCGCCAGCTCCGTCGCGG
CCGGTGCGAAGCGGCCGTTCGAGTACGGGAGGACGCATGTGGTGAGGCCCAAGGGGGCGC
ACAAGGCCACCATCGTCTGGCTTCACGGCCTCGGCGACAATGGAGCCAGCTGGTCTCAAC
TGTTGGAAACTCTTCCCCTTCCTAATATAAAATGGATTTGCCCAACTGCACCTACGAGGC
CCGTGGCAATTTTTGGTGGATTCCCATCTACTGCATGGTTTGACGTTGCTGATCTTTCAG
AAGATTCTCCTGATGATGTTGAGGGGCTGGATTCCTCAGCTGCACATGTTGCAAATTTAT
TGTCTACCGAACCTGCAGACATCAAGCTTGGTGTTGGTGGCTTTAGTATGGGTGCTGCTA
CTGCGCTTTACTCCGGTACTTGCTTTGCTCATGGAAAATATGGAAATGGCAATCCATACC
CTGTAAACCTAAGTGTGGCTGTTGGTCTCAGTGGCTGGCTCCCATGTGCCAGGTCATTGA
AGAACAAAATTGAGAGCTCACAGGAGGCTGCACAGAAGGCTTCATCATTACCTCTTATGC
TTTGTCATGGAAAAGCTGATGATGTGGTCCTCTACAAACATGGAGAGAGATCTGCTGATG
CACTTAAGTCAACCGGGTTTGCAAATGTGGAATTCAAGTCCTACAGCAGGCTCGGGCACT
ATACCGTTCCAGAGGAGATGGACGAAGTCGTCAAGTGGCTTACGGCAAGCTTGGAACTTG
GCAGTTCCTCGTCAACTTGATTGAATGAAGAGATGCCTTGAAAAGGGCTCGTTGTAGCGG
CGTCTAAATAATATAAGTACCTGTGGTTGTGCCGAAATTGAGTGATAAAATGGTTGGATA
GCCAACTTGGGCTTTGGGTATACGGTCATGTCTTAGCTTGGCATTTCATATGCAGACATG
CTTTACTGAATCTTGGTACTCTTGAGATTTCCATAAATTTGGTATGTGTTTTCATCCAAA
AAAAAAAAAAAAAATTGTGATCAGTTTGGTTTTGGTTACCGGTGATATTTTTTGTTTCAA
AGTATTCTATCATTTTTCCTACTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07960.1	258	5e-150	protein\|acyl-protein thioesterase, putative, expressed
Brachypodium v1_2	Bradi2g04650.1	256	7e-156
Arabidopsis v10	AT5G20060.2	252	5e-123	alpha/beta-Hydrolases superfamily protein \| chr5:6776800-6779447 FORWARD LENGTH=252