barSeed - Barley Seed Development Database

Probe CUST_28130_PI390587928

Source Contig U35_16174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28130_PI390587928	Hv_44K_v2	GGAAAATATGGAAATGGCAATCCATACCCTGTAAACCTAAGTGTGGCTGTTGGTCTCAGT	637	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.342	0.481	1.170	2.012	1.086	1.375
Raw	254.618	568.490	1194.311	3307.550	616.370	850.784

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36620.2	1312	2e-24	641 - 700	100	60 / 60	plus	ABC05309
MLOC	MLOC_36620.3	1014	2e-24	584 - 643	100	60 / 60	plus	ABC05309
MLOC	MLOC_36620.1	1080	2e-24	721 - 780	100	60 / 60	plus	ABC05309
JLOC1	JLOC1_23603.1	1361	8e-25	643 - 702	100	60 / 60	plus
Harvest21	ABC05309	1283	3e-25	619 - 678	100	60 / 60	plus	ABC05309
Harvest21	ABC05308	657	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_16174	725	3e-25	638 - 697	100	60 / 60	plus
Harvest35	U35_16173	1241	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (725 bp)

>U35_16174 725 Hv_44K_v2
ACTCACTCCCATAAGAGAAAAGACGCTCCCCTTTCCGCCGCCCAAATCCCTCCTTTCTCT
TCCCCATCCCTCCCTCGTACGCACGCACGCACGCACGCACTCGCGCTTCGCTTTTATTAA
CCCGTTTGCTGCCCAGGCCATTGGATTCGTGGCGTTGGCGAGCGTGGTCGCCAGCAGGAG
AGGAGGGACGGCGGCGGCGGCGACTGTTCGCGGGATGAGCTTCGGCGGCGCCAGCTCCGT
CGCGGCCGGTGCGAAGCGGCCGTTCGAGTACGGGAGGACGCATGTGGTGAGGCCCAAGGG
GGCGCACAAGGCCACCATCGTCTGGCTTCACGGCCTCGGCGACAATGGAGCCAGCTGGTC
TCAACTGTTGGAAACTCTTCCCCTTCCTAATATAAAATGGATTTGCCCAACTGCACCTAC
GAGGCCCGTGGCAATTTTTGGTGGATTCCCATCTACTGCATGGTTTGACGTTGCTGATCT
TTCAGAAGATTCTCCTGATGATGTTGAGGGGCTGGATTCCTCAGCTGCACATGTTGCAAA
TTTATTGTCTACCGAACCTGCAGACATCAAGCTTGGTGTTGGTGGCTTTAGTATGGGTGC
TGCTACTGCGCTTTACTCCGGTACTTGCTTTGCTCATGGAAAATATGGAAATGGCAATCC
ATACCCTGTAAACCTAAGTGTGGCTGTTGGTCTCAGTGGCTGGCTCCCATGTGCCAGGTC
ATTGA

Homology of Contig U35_16174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07960.1	258	8e-108	protein\|acyl-protein thioesterase, putative, expressed
Brachypodium v1_2	Bradi2g04650.1	256	1e-113
Arabidopsis v10	AT5G20060.2	252	8e-97	alpha/beta-Hydrolases superfamily protein \| chr5:6776800-6779447 FORWARD LENGTH=252