barSeed - Barley Seed Development Database

Probe CUST_28129_PI390587928

Source Contig U35_30467

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28129_PI390587928	Hv_44K_v2	CAGAACATCTTGTGAGAAAGCGCTTGGCGCTACGACTCTTTCTGTAATCTGCATTTTGTG	244	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.776	4.771	1.476	0.482	0.901	0.802
Raw	28.941	58.199	14.934	5.513	2.709	2.658

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73607.1	2903	7e-23	36 - 95	98	59 / 60	minus	None
MLOC	MLOC_73607.2	2903	7e-23	36 - 95	98	59 / 60	minus	None
JLOC1	JLOC1_49007.1	2997	4e-23	2781 - 2840	98	59 / 60	plus
Harvest21	ABC30396	332	3e-25	245 - 304	100	60 / 60	plus
Harvest35	U35_30467	332	3e-25	245 - 304	100	60 / 60	plus

Contig Sequence (332 bp)

>U35_30467 332 Hv_44K_v2
TTCAAATCCAACCAGTTGCCCTGACCTACTAGACATCTTCTGATGATGACTGAACTCCTT
TTCCATCACTCTATACTCTGCTTACTCTGGACTAAATTGCTGGTCAGTGCTTACCATAGA
TAGGTACCAGCCTTTAGCTTATCAAACTGTCGTTTCAGCATCAAATCAATTTTTTGATCT
TAGCATCATCATTAAGCGACCATGACTGATTTGCTATGGAGGCATAGAGCTCTGATATGA
CCGGCAGAACATCTTGTGAGAAAGCGCTTGGCGCTACGACTCTTTCTGTAATCTGCATTT
TGTGAGGCAGTGGCTTGGGCATGCATGGTGAA

Homology of Contig U35_30467 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None