barSeed - Barley Seed Development Database

Probe CUST_28113_PI390587928

Source Contig U35_28153

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28113_PI390587928	Hv_44K_v2	TTGTTAGCTTGATGCTGCTGATTGACAGACATGTTATGTATGCCTTTCAGATGCGGATTT	203	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21909.1	1105	2e-24	379 - 438	100	60 / 60	plus	ABC05534
JLOC1	JLOC1_15192.1	1140	8e-25	378 - 437	100	60 / 60	plus
Harvest21	ABC26850	593	3e-25	204 - 263	100	60 / 60	plus
Harvest35	U35_28153	593	3e-25	204 - 263	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_28153 593 Hv_44K_v2
GCAGAGTTCTATCGACAGTGACACTTGTTACTTGGTTAAAACTGNGAAAAAATTAGCAAA
AAAGTGGACGGTACTTCGTTTATTCTGTTTTAGAACAATAAACGCCATGATCACTGAAAT
CTCATAGTAGTACCGTGGCAGTTTATATATTCTGTTTCTTCATTTAGGTTCTTTAGGAAA
AATCTGGAATGTTTCTTTCATCATTGTTAGCTTGATGCTGCTGATTGACAGACATGTTAT
GTATGCCTTTCAGATGCGGATTTTAGGAATACTGGGTTAGAGAGATCAGAGCCACTGAAG
AAAGATCTGGAATGGTTCACGGAACAGGGTCACACCATTCCAGAACCAACTGCTGCTGGT
ACTGCATATGCTTCCTATCTGGAAGAGTTGTCTGAGAAGGACCCCCAAGCATTTATCTGC
CACTTCTATAATGTGTACTTTGCTCATACTGCTGGAGGCCGAATGATTGGCAAAAAGGTT
GCTGAGAAGATTCTGAACAAGAAAGAGCTGGAGTTCTACAAGTGGGAAGGTACCCTGTCT
CAGCTGCTGCAGAATGTCCGCACCACACTAAACCAAGTCGCTTCTAGCTGGTC

Homology of Contig U35_28153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40080.1	290	3e-65	protein\|heme oxygenase 1, putative, expressed
Brachypodium v1_2	Bradi1g36640.1	280	2e-68
Arabidopsis v10	AT2G26670.1	282	1e-56	\| Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 \| Plant haem oxygenase (decyclizing) family protein \| chr2:11341816-11343394 FORWARD LENGTH=282