barSeed - Barley Seed Development Database

Probe CUST_2810_PI390587928

Source Contig U35_22833

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2810_PI390587928	Hv_44K_v2	AAGTTCCATTCATGCGCTTTCCACCCTAAGTATCCATCTTTGCTCATCATTGGTTGCTAC	1097	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.472	2.156	1.071	0.963	0.424	0.306
Raw	372.973	280.174	120.657	163.178	26.567	21.749

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373991	3081	2e-24	2571 - 2630	100	60 / 60	plus	None
MLOC	MLOC_11792.1	3477	2e-24	2942 - 3001	100	60 / 60	plus	None
JLOC1	JLOC1_7855.1	1884	8e-25	1349 - 1408	100	60 / 60	plus
Harvest21	ABC17177	1246	3e-25	1098 - 1157	100	60 / 60	plus
Harvest35	U35_22833	1246	3e-25	1098 - 1157	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_22833 1246 Hv_44K_v2
GGTTTCTATGGATGGAGGCTTGTGCTATTCCTTCCGTGGAAATGAACAGGTTCCCAAGAA
TCAAACTGGGCGAAAACGCAAACAACCCCTCTCATCATCTGGTCCAGCTAACAGCTCTGG
TACGATGAATACTACTGGCCCCTGCCCCAGCTCAGCACCCTCAACTCCTTCCACAGATAC
AGATACTCCAGGAGACACCATATCAATGCCACCGATGCACCACAATGCTAGTATATCAAA
GGCCTCAGTTGTTTTTGGTGCTGATGCCCCAGGCACAAGGGAATCACCAACAAACCAGAT
TGCTGACATGGATCGCTTGGTGGAGGATGACAGCTTGGGAGATAACGTGGACTCGTTCTT
GTCACATAATGATGCTGCAGGTCCAAGTGATGGCCACAGTCGCTGTATGGCTTCTTCTAA
AGGATTCACCTTCCGGGAGATTTCTTCAGCTCGAGCAAGCACAAACAAGGTTGTATGCTG
TCACTTCTCATCAGATGGAAAGCTACTTGCAACTGGCGGTCATGATAAGAAGGTGGTATT
GTGGCATGCTGAAACTTTAAAACAAAAGGCAGTATTGGAGGAGCATTCTCTTCTGATAAC
TGATGTACGGGTTCGGTCCAAGCATTCCACGTATTGCTACATCATCATTTGATAAAACCG
TCAGGGTCTGGGACGTCGACAATCAAGATGATACAGTCCATACGTTTACCGGGCACTCAG
CATCTGTTATGTCAGTGGATTTTCACCCAAACAAGGATGACCTCATTTGTTCTTGTGATG
GGAATGGTGAGATTCGGCTCTGGAGTATTAGCAACGGAAGGGCTGTCCGAAATTTCAAGG
GAGGTTCAAGCCAGCTGAGATTTCAGCCTCGTCTTGGTGGATTTCTTGCAGCTGCTTCAG
AGAATGTTGTGTCTATACTGGATGTGGAAACACAAGCTTGTGTGAGGATATTTGAGGGTC
ACACAGGGCATGTTGATTCACTTTGTTGGAGCCCCACAGGTGACTATGTTGTCTCTACCA
GTGAAGACACGGTAAAAGTATGGTCTGTGAATTCTGGGAATGAGAACTGCGTGCAAGAGC
TCAACAGCACCGGGAGCAAGTTCCATTCATGCGCTTTCCACCCTAAGTATCCATCTTTGC
TCATCATTGGTTGCTACCAGTCTCTGGAGCTGTGGGACATGGTGGAGAACAGGAGCATGA
CCGTGGCGGCGCACGACGGCCTCATCTCCGCCTTGGCCTCCTCAAG

Homology of Contig U35_22833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08190.1	878	4e-166	protein\|transcriptional corepressor LEUNIG, putative, expressed
Brachypodium v1_2	Bradi2g04820.1	880	9e-180
Arabidopsis v10	AT4G32551.2	969	5e-136	\| Symbols: LUG \| LisH dimerisation motif;WD40/YVTN repeat-like-containing domain \| chr4:15707863-15713359 FORWARD LENGTH=969