barSeed - Barley Seed Development Database

Probe CUST_28108_PI390587928

Source Contig U35_28156

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28108_PI390587928	Hv_44K_v2	GACACAATTTTTTGTTAGATTGTTGTCAGTAGAGTCAAAAGGTCCATGTACACATATGCA	602	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355061	1135	2e-24	1037 - 1096	100	60 / 60	plus	ABC04437 ABC04438
MLOC	MLOC_74679.2	1652	2e-24	787 - 846	100	60 / 60	plus	ABC04437 ABC04438
JLOC1	JLOC1_49794.2	870	8e-25	796 - 855	100	60 / 60	plus
Harvest21	ABC49418	680	3e-25	96 - 155	100	60 / 60	minus
Harvest21	ABC26860	662	3e-25	603 - 662	100	60 / 60	plus
Harvest21	ABC04438	926	3e-25	76 - 135	100	60 / 60	minus	ABC04438
Harvest35	U35_47893	680	3e-25	96 - 155	100	60 / 60	minus
Harvest35	U35_28156	662	3e-25	603 - 662	100	60 / 60	plus
Harvest35	U35_16123	1156	3e-25	1022 - 1081	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_28156 662 Hv_44K_v2
CCCGGGCTGCAGGCGCGACCGTCGCGGACTGGAGAAGCTGGAGAAGATCTTCGCCGAGGA
GGCCATCGCCGAGTTCTTCGACAACCCCACCGTGCCGCGCGAGGAGAAGACGGCGCTCAT
CGACGAGATCGCCAAGTCGTCCGAGCTGCAGCCGCACACCGTCAACTTCCTCAACGTCGT
CATCGACAACACCCGCGCGGGCCTGATGCCGCAGATCGTGCGCGAGTTCGAGACCGCCTA
CAACGCGCTCACCGGCACCGAGGAGGCCGTCGTCACCTCCGTCGTGCAGCTCGAGTCGCA
GGACCTCGCGCAGATCGCCACGCACGTGCAGAACATCACCGGCGCCGCCAACGTCCGGAT
CAAGACCCGCCTCGACCCGGAGCTCATCGCCGGATTCACCGTGCAGTACGGCCGCGACAG
CTCCAACTTCATCGACATGAGCGTCCGCAAGCAGATCGCGGAGATCACCTCCGAGTTGGA
GATGCCCTCCGTTAACCTCGAAGTCTGATGCTTAGGAGAAATTTCTGTACTGTGTGCTGT
GCACAAGAGGGAAACCAACCTGCAAATCAGATTGGAACTACTACAACCAAAGGGGAAACG
GAGACACAATTTTTTGTTAGATTGTTGTCAGTAGAGTCAAAAGGTCCATGTACACATATG
CA

Homology of Contig U35_28156 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51470.2	244	1e-72	protein\|ATP synthase F1, delta subunit family protein, putative, expressed
Brachypodium v1_2	Bradi3g59130.1	248	3e-77
Arabidopsis v10	None