- Probe CUST_28104_PI390587928
- Source Contig U35_30472
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28104_PI390587928 | Hv_44K_v2 | CATATTGTACCGGTAGAAGAGAGATTGTCCAAGATATTCCAAACCTGTTGCCAGAGAATC | 507 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365161 | 3542 | 7e-23 | 456 - 515 | 98 | 59 / 60 | plus | ABC11892 ABC15187 ABC19934 |
| MLOC | MLOC_55396.3 | 1307 | 7e-23 | 637 - 696 | 98 | 59 / 60 | plus | ABC11892 |
| MLOC | MLOC_55396.2 | 3719 | 7e-23 | 1174 - 1233 | 98 | 59 / 60 | minus | ABC10086 ABC11892 |
| MLOC | MLOC_55396.1 | 3880 | 7e-23 | 1329 - 1388 | 98 | 59 / 60 | minus | ABC10086 ABC11892 |
| JLOC1 | JLOC1_35727.1 | 3644 | 4e-23 | 2394 - 2453 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC30405 | 570 | 3e-25 | 508 - 567 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11892 | 1494 | 1e-23 | 808 - 867 | 98 | 59 / 60 | plus | ABC11892 |
| Harvest35 | U35_30472 | 570 | 3e-25 | 508 - 567 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_5539 | 1494 | 1e-23 | 808 - 867 | 98 | 59 / 60 | plus |
Contig Sequence (570 bp)
>U35_30472 570 Hv_44K_v2 CACAAGCCAAGTTTAACCAGCTAGCCGACCAAATTGACAAGGATGTGGGGATTACACGGC TCAACCTGTTCTCACCTTGCAAACATTTTACCTTGTAGATTAATGTCTTCTTGAGGATAA CCGGGAAGAGACCAGATGGGTTCCATGACCTGGCTTCTCTGTTTCACGTGGTTAGTTTGG GTGATACTATCAAATTCTCACTGTCGCCAAGTAAGAGCAAAGATCGGCTATCAACCAATG TTGCAGGTGTCCCAGTTGATGAGAGTAACTTGATCATCAGGGCACTTGATCTGTACCGCA AGAAAACTGGCACCGATAAGCACTTTTGGATACATCTTGATAAGAAAGTCCCAACTGGTG CTGGTCTTGGTGGAGGAAGCAGTAATGCTGCAACTGCACTATGGGCTGCTAACCAGTTTA GTGGTAGCATTGCTTCAGAAAAAGATCTTCAAGAATGGTCTGGTGAGATTGGATCAGATA TCCCCTTCTTCTTTTCACGAGGAGCAGCATATTGTACCGGTAGAAGAGAGATTGTCCAAG ATATTCCAAACCTGTTGCCAGAGAATCTGC
Homology of Contig U35_30472 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g58790.1 | 402 | 3e-99 | protein|GHMP kinases ATP-binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g52610.1 | 407 | 4e-105 | |
| Arabidopsis v10 | AT2G26930.1 | 383 | 9e-82 | | Symbols: ATCDPMEK, PDE277, ISPE, CDPMEK | 4-(cytidine 5-phospho)-2-C-methyl-D-erithritol kinase | chr2:11491829-11494229 REVERSE LENGTH=383 |