- Probe CUST_28101_PI390587928
- Source Contig U35_16181
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28101_PI390587928 | Hv_44K_v2 | TTAGATTTCTGGAAAGTGCTTTTTCCGGTTGCTGTGGCTCATACAATTGGACATGTTGCT | 662 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.519 | 0.825 | 2.157 | 2.731 | 0.867 | 0.715 |
| Raw | 69.711 | 178.900 | 401.028 | 825.052 | 91.716 | 81.551 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_50953.4 | 1549 | 2e-24 | 610 - 669 | 100 | 60 / 60 | plus | ABC04880 ABC37565 ABC42991 |
| MLOC | MLOC_50953.1 | 1769 | 2e-24 | 847 - 906 | 100 | 60 / 60 | plus | ABC04880 ABC37565 ABC42991 |
| MLOC | MLOC_50953.2 | 1743 | 2e-24 | 821 - 880 | 100 | 60 / 60 | plus | ABC04880 ABC37565 ABC42991 |
| MLOC | MLOC_50953.3 | 1785 | 2e-24 | 863 - 922 | 100 | 60 / 60 | plus | ABC04880 ABC37565 ABC42991 |
| JLOC1 | JLOC1_32509.4 | 1804 | 8e-25 | 706 - 765 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_32509.3 | 1851 | 8e-25 | 753 - 812 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_32509.2 | 1835 | 8e-25 | 737 - 796 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_32509.1 | 1691 | 8e-25 | 593 - 652 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04882 | 735 | 3e-25 | 659 - 718 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04881 | 740 | 3e-25 | 663 - 722 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04880 | 1553 | 3e-25 | 510 - 569 | 100 | 60 / 60 | plus | ABC04880 |
| Harvest35 | U35_16182 | 735 | 3e-25 | 659 - 718 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16181 | 740 | 3e-25 | 663 - 722 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16180 | 1561 | 3e-25 | 510 - 569 | 100 | 60 / 60 | plus |
Contig Sequence (740 bp)
>U35_16181 740 Hv_44K_v2 CCTCCTCGTGATCTCCGGGTTCCCGTCTCAGATTCCCAGGTTCGATCTTGATCCCCCAGC TATCCCCACCTGCCTCTCCCGTCCTCGAATCCTTCGTCGCAGAGGCGCCGCTTTTACCTC TTCTTGCCGCGATTTGAGAAGAAGACTTTATTGATCCGAGTAAGTGTTCTTGGGCGGGAA GAAAGGTGAGATCTTGCACAGGAGCCATGATACCTGCTGTGAAGCTCTCTCCGGCCGCCT TCTCTGTCACCAATCAACGGACTAAATCAGCTTTGGTTCCATCGGTGTCCATTCTCAACA CAAATTCTTTTGTGTCCTGCTCCTTTAGACCACTCTACCTCACACGGATAGATGACCCAC AGACTTCTGAGCTGAAGCCTCGGAGGCAGCTTCTTGACTTCCAGTGTGCAGCTTCAGCGG CTGATGACAAGGAGTCAAAGGCTGAGGTGGTGCCAGCTAGCTCAGAAGCAGCACAAAAGT TGAAAATTTCAATCTATTTTGCGACTTGGTGGGCGCTTAATGTGATCTTTAACATCTATA ACAAGAAGGTTCTCAATGCTTTCCCGTATCCCTGGCTCACCTCCACACTATCTCTCGCCT GCGGCTCAGCGATGATGCTCTTCTCATGGGCCACCCGCCTAGTTGAGCCCCCCAAGACTG ACTTAGATTTCTGGAAAGTGCTTTTTCCGGTTGCTGTGGCTCATACAATTGGACATGTTG CTGCCACAGTGAGCATGTCA
Homology of Contig U35_16181 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g08840.2 | 388 | 6e-80 | protein|phosphate/phosphate translocator, putative, expressed |
| Brachypodium v1_2 | Bradi3g15310.1 | 388 | 7e-87 | |
| Arabidopsis v10 | AT1G61800.1 | 388 | 3e-51 | | Symbols: GPT2, ATGPT2 | glucose-6-phosphate/phosphate translocator 2 | chr1:22824527-22826459 FORWARD LENGTH=388 |