barSeed - Barley Seed Development Database

Probe CUST_2809_PI390587928

Source Contig U35_22834

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2809_PI390587928	Hv_44K_v2	CGGGATGTCTACAAGTGTAAACTGTCACGAATAAAGTCAACAGTAAACATATAACGTATT	934	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70060.1	6661	2e-24	5025 - 5084	100	60 / 60	plus	ABC17120
MLOC	MLOC_70060.2	4455	2e-24	2445 - 2504	100	60 / 60	plus	ABC17120
MLOC	MLOC_70060.5	3115	2e-24	1006 - 1065	100	60 / 60	plus	ABC17120
JLOC1	JLOC1_46469.2	3357	8e-25	1591 - 1650	100	60 / 60	minus
JLOC1	JLOC1_46469.1	3343	8e-25	1577 - 1636	100	60 / 60	minus
JLOC1	JLOC1_46468.3	2897	8e-25	2268 - 2327	100	60 / 60	plus
JLOC1	JLOC1_46468.2	2902	8e-25	2273 - 2332	100	60 / 60	plus
JLOC1	JLOC1_46468.1	2893	8e-25	2264 - 2323	100	60 / 60	plus
Harvest35	U35_22834	1017	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (1017 bp)

>U35_22834 1017 Hv_44K_v2
TCGGACGGCAAGGCCCGGCGAGCTCAACTACAGCTTCATCACCAACGGCCCCTCCTTCTT
CACGCATTTCTGTTAGGAGATTAACTGGACCTGATATTTTCGGTATACCTGTATGTGAAG
GATTTGTAAATTCACGCTTCGGTTTAGGAAATACCGTACTTACGTACTCCTACAGCGGCC
GCTAGCACACACTCCTCTCTGGGTGCGGTCATGCTTAAGCCAGATGAGGTACTTCAAGGA
ACCACAGCGGATGAAAACCGGTTTCAATATGTCACTGAACCATCTCACCCCAGTGAGCAT
GTTCATGGTGATCAGAATGCAGTTAACACACATTATTACCAAGGTGTTCCACCCCTTGGC
CAGTAGCAACCTAAAATATTCATGGCACCTTCACAGTTGGATGGTGAACTTCTGTGGATC
TTAGAAGGATCAGTTCAAGCGAACATCCATACGCAGATGGAAGTTCCCATGTCCATGGAT
AGCGGCAACGGCATGGAGGCATCAACCTTTGTTCAACACAATCTTCTGCCGCAACAATTT
ATGCCTACTCAGTTCCAAGAAAACATGCCTGTGATCCATAGCTCTGAGAATCCACTTAAC
CATGTCTCTGGACCATCGATATGGCACAATGATCCTATCACCGAACCGGAGCCTAGTGTT
TATCCATATCCTGGACTGGATCATGGAAACTTTTAGCAGGCAGGCAGATTCTGCAATGCA
GTTTAGGTCATGTAACATCATGGTTTTGTCATTATAACTTAGGTATCAGGCATTGTAGAC
CGTATGTTTGGACACAAAGTGCTTTGCCCCCATTCTTCATATTTGTTGTTCTAGACGTTG
TACAATGATGTTGTGTAGGATCTGAGGTTGTGCTGCAACTCGGGCAAAACATTTTGTTGT
CTGCGTGCAATGTTTAATTGATGTTTATATGTTTCGGGATGTCTACAAGTGTAAACTGTC
ACGAATAAAGTCAACAGTAAACATATAACGTATTATTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_22834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None