barSeed - Barley Seed Development Database

Probe CUST_28097_PI390587928

Source Contig U35_13025

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28097_PI390587928	Hv_44K_v2	TCAAAGCTTCATCATCCAAACGTAGTAGCATTCTATGGTGTTGTGAAGGATGGGCCAGGT	317	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.711	0.952	1.798	2.048	0.946	0.715
Raw	28.455	59.078	96.890	167.950	27.682	22.903

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44779.1	4563	2e-24	3565 - 3624	100	60 / 60	plus	ABC35357
MLOC	MLOC_44779.2	4416	2e-24	3411 - 3470	100	60 / 60	plus	ABC35357
JLOC1	JLOC1_29043.2	3809	8e-25	2918 - 2977	100	60 / 60	plus
JLOC1	JLOC1_29043.1	4326	8e-25	3435 - 3494	100	60 / 60	plus
Harvest35	U35_13025	483	3e-25	318 - 377	100	60 / 60	plus

Contig Sequence (483 bp)

>U35_13025 483 Hv_44K_v2
CATATCAACCTGTGGTGGACAATACGAATCTGCCTGCTCCAGATTTCGAGGAACCTAAGT
TCGAAGAGGACAGAACTGCCGCACAAGTCATGGATGCTTCCCTTCGAGATTCTGATTTTG
AACACTTGCAGATCATCAAGAATGAAGATCTCGAGGAGCTTAGGGAACTTGGTTCTGGTA
CTTTTGGAACCGTTTACCATGGGAAATGGAGAGGAACTGATGTGGCTATCAAGCGCATCA
AGAAGAGCTGTTTTACAGGACGATCATCTGAGCAAGAAAGGCTGGCACAAGAATTCTGGC
GAGAAGCTGAGATTCTGTCAAAGCTTCATCATCCAAACGTAGTAGCATTCTATGGTGTTG
TGAAGGATGGGCCAGGTGGTACCCTGGCGACTCTGACCGAGTTCATGGTTAATGGTTCTC
TTCGGCATGTCTTGCAGCGGAAGGACAGTGTCCTGATCTCCGCAGCGGCTGATCATAGCG
ATG

Homology of Contig U35_13025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g25680.1	1220	4e-77	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi1g00580.1	1110	9e-85
Arabidopsis v10	AT1G79570.1	1248	7e-64	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain \| chr1:29932856-29937540 REVERSE LENGTH=1248