barSeed - Barley Seed Development Database

Probe CUST_28094_PI390587928

Source Contig U35_13028

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28094_PI390587928	Hv_44K_v2	CAGCGATATGAAACCTACTTTCAGAAAGTAATGCAGAAGTTTATATTCTCTCCGTTCTAA	669	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80125.1	2018	7e-23	1962 - 2018	100	57 / 57	plus	ABC24721 ABC24749
Harvest21	ABC24749	744	3e-25	16 - 75	100	60 / 60	minus	ABC24749
Harvest35	U35_13028	744	3e-25	670 - 729	100	60 / 60	plus

Contig Sequence (744 bp)

>U35_13028 744 Hv_44K_v2
CCGATCATCCCGGCACACGAGGCCATGGAGGACTGCACGGTAGGTGGCTTCCGTGTCCAG
CGTGGCACGATGATCCTCGTGAACGCATGGGCGATCCACCGGGACGCCAATGTCTGGGAC
GCGCCGGAGGAGTTCATGCCGGAGCGGTTCATGGACAAAGACACGGTCACCACGCCCATG
CTGCCGTTCGGGCTTGGCCGGAGGCGATGCCCCGGGGAGGGCCTGGCGATGCGCCTTGTT
GGCTTGACTCTGGCAACGCTCGTGCAGTGCTTTGAGTGGGACGTTGGTCAAGGCGACACC
ATCGACATGGCCGAAGGTGCTGGCCTGTCAATGCCAATGGCGACGCCGTTGGCGGCTATC
TGTCGGCCCCGGGAGTTTGTCCAGAGTGTGCTCTCTGCTTCCACATGAGGGACCGCACAC
AGGTGTCTAAAGGAAAAGGAACGAAAATCTGGACTATGATTGTTTAGCAGTGGTGCAGTG
GTGCTGAATATTAGAGGTCTCATCCTCTTCTATGCTCATGCTTGGTAGCAAGGTCGTGGC
GTTAGTAACAGCGCACTTGTGGATTTTTTTTATGATATGATTTCTGTTGTTTGGTTTTTT
TTTGTTGCTCTGTTTTGCAAGAGGGTTTCTCTCTACCTTATATTGTTTGGTTATGTAATA
CTGTTTATACAGCGATATGAAACCTACTTTCAGAAAGTAATGCAGAAGTTTATATTCTCT
CCGTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13028 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g39300.1	509	2e-68	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi4g03440.1	536	3e-65
Arabidopsis v10	None