barSeed - Barley Seed Development Database

Probe CUST_28088_PI390587928

Source Contig U35_28993

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28088_PI390587928	Hv_44K_v2	AGTCTGTCAGGGTCTGATCATTGTATTATTTCTCCCACAGCATTCTTTCACCCCAGTGAT	575	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14650.2	13289	2e-24	10187 - 10246	100	60 / 60	plus	ABC18043
MLOC	MLOC_14650.3	13266	2e-24	10164 - 10223	100	60 / 60	plus	ABC18043
MLOC	MLOC_14650.1	13813	2e-24	10635 - 10694	100	60 / 60	plus	ABC18043
JLOC1	JLOC1_10003.3	13280	8e-25	10346 - 10405	100	60 / 60	plus
JLOC1	JLOC1_10003.1	13541	8e-25	10382 - 10441	100	60 / 60	plus
Harvest21	ABC28139	638	3e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_28993	638	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_28993 638 Hv_44K_v2
GTGGTGACCTTTCACTTGTGTCTGGTTGGCCCTTGATTCCTGCTTTTCTCAACAGGCCAA
TTCTATGCTGTGTGAAAGAACGCCATCTAATATTTGTACCTCCAGTGGATGATTCAAACA
CTCAGATGGTACATGTTAGTGCGGTTGTTGATGATGTAGCTAGAGAGATTGATACATCTG
GTCTAAATGGAGATGACACTGGTGAAGCTGAACAGAAGAGTGCACTTGATACTGCATTTG
AGTCAATGAACTCAAAGTTTCCGTGGTTATCTGCTCTGCTTAATCAGTTGAACATACCAA
TTCTCCATTTGTCTTTCCCAGAGTGTGGTGCCATATGCAATTTGTTTCCTTCACGTGATC
GAACTCTTGGACAGACAATTGCTTCTAAGTTAGTTTCAATAAAAAATGATTCTCATTTAC
CTTCATCACTTAATCTATCAAGCGAAGATTGTGATAGACTGTTCACGCTATTTGTCTCAG
ACTTCAGATTATCTAGCAGCCACCTTTATCAGAGAGAAGAATTGGACGTCTTGAGAGAGC
TTCCGATGTATAAAACAGTTACAGGAGCATACACTAGTCTGTCAGGGTCTGATCATTGTA
TTATTTCTCCCACAGCATTCTTTCACCCCAGTGATTCC

Homology of Contig U35_28993 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g26017.1	4755	8e-113
Arabidopsis v10	None