barSeed - Barley Seed Development Database

Probe CUST_28085_PI390587928

Source Contig U35_25003

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28085_PI390587928	Hv_44K_v2	TGGCGTATTTGAGGTGGATGTATCAAACTGGTCACCATTTATGCCAAATGGTTTCAAAGC	539	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51108.2	2174	7e-23	834 - 893	98	59 / 60	plus	ABC13373
MLOC	MLOC_51108.3	2110	7e-23	1089 - 1148	98	59 / 60	plus	ABC13373
MLOC	MLOC_51108.4	2007	7e-23	821 - 880	98	59 / 60	plus	ABC13373
MLOC	MLOC_51108.1	2274	7e-23	860 - 919	98	59 / 60	plus	ABC13373
JLOC1	JLOC1_32620.2	1919	4e-23	834 - 893	98	59 / 60	plus
JLOC1	JLOC1_32620.1	2200	4e-23	834 - 893	98	59 / 60	plus
Harvest21	ABC23534	602	3e-25	540 - 599	100	60 / 60	plus
Harvest35	U35_25003	602	3e-25	540 - 599	100	60 / 60	plus

Contig Sequence (602 bp)

>U35_25003 602 Hv_44K_v2
GAGCTCGGCGTCCTCGAGCTCGTGCTCCTCGGGATCGGCGCGTCCATCGGCGCCGGCATC
TTCGTCATCACCGGGACCGTCGCCCGCGACGCCGGCCCAGGTGTTACAATCAGTTTTGCT
CTCGCTGGAGCTGCGTGTGTGCTCAATGCATTGTGCTATGCTGAACTGGCATCTCGTTTT
CCTGCTGTGGTCGGTGGAGCGTACTTGTACACATATGCAGCGTTTAATGAACTCACGGCC
TTCTTGGTTTTCACTCAGTTGATGCTTGATTACCATATTGGGGCAGCAAGCATTGCTCGT
AGCTTAGCGAGCTATTTTATCCAATTCTTGGAGCTGATTCCGTCCGTGAAAGGCAATGTT
CCAAGTTGGATTGGGCATGGAGAAGAGTTTTTTGGTGGTGTTGTTTCAGTTAACATATTG
GCTCCAATCCTTCTTGTCATCCTAACCGTGATCCTCTGCCGTGGTGTCAAAGAATCGTCA
GCAGTGAATACTTTTATGACTACATTGAAAATAATCATCGTCATAGTCGTTGTATTTGCT
GGCGTATTTGAGGTGGATGTATCAAACTGGTCACCATTTATGCCAAATGGTTTCAAAGCT
GT

Homology of Contig U35_25003 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43860.2	534	2e-105	protein\|amino acid permease, putative, expressed
Brachypodium v1_2	Bradi3g50560.1	604	3e-107
Arabidopsis v10	AT1G05940.1	569	8e-86	\| Symbols: CAT9 \| cationic amino acid transporter 9 \| chr1:1801365-1803942 REVERSE LENGTH=569