barSeed - Barley Seed Development Database

Probe CUST_28076_PI390587928

Source Contig U35_13030

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28076_PI390587928	Hv_44K_v2	TACTGAACTAGAGTACATGAACATCACGGTGATCACTTCTAACAAACCGTATGGCGTGCG	371	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366538	2800	2e-24	1113 - 1172	100	60 / 60	plus	ABC40405
MLOC	MLOC_60090.4	2681	2e-24	875 - 934	100	60 / 60	plus	ABC40405
MLOC	MLOC_60090.2	2409	2e-24	1148 - 1207	100	60 / 60	plus	None
MLOC	MLOC_60090.1	2962	2e-24	1204 - 1263	100	60 / 60	plus	ABC40405
MLOC	MLOC_60090.3	2375	2e-24	1133 - 1192	100	60 / 60	plus	None
JLOC1	JLOC1_39151.2	3031	8e-25	1138 - 1197	100	60 / 60	plus
JLOC1	JLOC1_39151.1	3097	8e-25	1184 - 1243	100	60 / 60	plus
Harvest21	ABC25540	562	3e-25	372 - 431	100	60 / 60	plus
Harvest35	U35_13030	563	3e-25	372 - 431	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_13030 563 Hv_44K_v2
GGCGGCGTGCGGGTGACGGGGAACCTCTTCACCGCCTACGGCGCCAACCCGTTCGCCGAG
TTCAATGTGTTTGGTGACCCCTTCGCCGCCTACCAGGTGCTCCACTCCGGCGTCCCCATC
ACGCTCGTCCCTCTCGACGCCACCAACACCATCCCTGTCACGGAGGAGTTCTTCGGAGAG
TTCGGCCAGCGGTGGCAGACCACGCCCGAGGCACGCTACTGTTTCCAGTCGCTGGACCAG
GTCCTGAGGAGACACAGAAGGCCGGCGCCCGGCCTCCATGGTAGCACGGGCTATTACATG
TGGGATTCCTTTGCCGCGGGCGTGGCTTTCTCTAGCATGCGCAATGGCGAAGCCAATGGC
GCAAATGACTTTACTGAACTAGAGTACATGAACATCACGGTGATCACTTCTAACAAACCG
TATGGCGTGCGCGACGGCTCGAACCCGTTTTTTGACGGCCGCGCGACACCCAAGTTTGGT
CTGGAGGAGGGTGGTGTTCACAGTGGCCATGTCCAGACTGGGATCAGAGATAGTTTCTGC
TTGGTGCCGGGAAGCAACGCAGG

Homology of Contig U35_13030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33630.6	482	1e-98	protein\|inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi2g25630.1	851	4e-105
Arabidopsis v10	AT5G18860.1	890	3e-67	inosine-uridine preferring nucleoside hydrolase family protein \| chr5:6291023-6295581 FORWARD LENGTH=890