barSeed - Barley Seed Development Database

Probe CUST_28075_PI390587928

Source Contig U35_13031

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28075_PI390587928	Hv_44K_v2	AGGATGGTAACGAGAGTGAAAAAAGTACCACATCAGATTCGAATCTTGATCCTGGCAACG	597	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357041	3286	2e-24	698 - 757	100	60 / 60	plus	ABC10831
MLOC	MLOC_37498.3	2957	2e-24	1710 - 1769	100	60 / 60	plus	None
MLOC	MLOC_37498.4	2842	2e-24	1710 - 1769	100	60 / 60	plus	None
MLOC	MLOC_37498.5	3134	2e-24	1806 - 1865	100	60 / 60	plus	None
MLOC	MLOC_37498.1	3557	2e-24	2120 - 2179	100	60 / 60	plus	None
JLOC1	JLOC1_24283.1	3836	8e-25	2123 - 2182	100	60 / 60	plus
Harvest21	ABC38010	657	3e-25	598 - 657	100	60 / 60	plus
Harvest35	U35_13031	657	3e-25	598 - 657	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_13031 657 Hv_44K_v2
GTGCAAGAACCCAGTCTAGCCCTGAACTGACAGATCCTTCTATTGAAGGATATTCTCGTG
GAAGGCGAACTAGAGTGGTAGAAATGGAGAAGCCTGTGAACAATGATTACAATAACAGAA
GGAATAACTTAGTTCCAGAAGTGCCTAGCAACCACAGCACTAAATCTTCACAGGATGAGT
CAATGTCTTCCATGAACAGTTCATCTCACCCTAGTGCAAAAGCAGCTTCTGAATCAAATA
GTGTTTCCAGCAGCTATCATGAAGACAATGGTTTTGTAATTAACGAAGAACTTCCTTCTG
TATCTGAGGCATCAGAGATGCAGCATGAGGAACATGCTCTAGTTAATCTAATGGCATCAG
CAAAGTTGCATGGTTTCAATGGACAGGCTCAATTGCCAATGCAATTACCTTCTCATATGT
CTGTAGCATCTTTGCCCTTACTGCCTCCAACAGCTTTTCCTCAAAAACCTTTTGCCGGTA
TTCCACCAACTAGCTTAATTGGGAGCCAGTGGTTGCACAACATGCAGTTTCTCCAAGGAT
TTGTTCCACCACCTATGGCCCATTATACTTACAACCCTTCGTTTGCACCAAACACAGAGG
ATGGTAACGAGAGTGAAAAAAGTACCACATCAGATTCGAATCTTGATCCTGGCAACG

Homology of Contig U35_13031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11240.1	1317	2e-69	protein\|nucleotidyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g70407.2	1308	2e-79
Arabidopsis v10	None