barSeed - Barley Seed Development Database

Probe CUST_2806_PI390587928

Source Contig U35_22837

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2806_PI390587928	Hv_44K_v2	ACACATTTTTCATCTTTTTAAGCCACTGGTCGATCGAGTGCTCGACTCAGTCTCTCCGTA	6	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60038.2	2045	2e-24	1797 - 1856	100	60 / 60	minus	ABC47182
MLOC	MLOC_60038.1	1443	2e-23	1386 - 1443	100	58 / 58	minus	ABC47182
JLOC1	JLOC1_39121.1	1914	8e-25	1736 - 1795	100	60 / 60	minus
Harvest35	U35_22837	502	3e-25	7 - 66	100	60 / 60	plus

Contig Sequence (502 bp)

>U35_22837 502 Hv_44K_v2
AGGTCCACACATTTTTCATCTTTTTAAGCCACTGGTCGATCGAGTGCTCGACTCAGTCTC
TCCGTACCGTACGTGCGTCCACCAAGGCATGGCCGGCGAGAGCGACGACCGGGGCGCCGC
GCGCGCGCCGCATGTGGCGCTACTCTCGTCGCCGGGCATGGGTCACGTGGTGCCGGTGGC
CGAGCTGGCGCGGCGGCTGCACGCGGAGCACGGCTTCACGGCCACCGTCGTCACCTACGC
CAGCTCCGACTCCGCGGCGCAGCGCGCGTTCCTGGCATCCCTCCCGCCGGCCGTCGGCTC
CGCGTCCCTCCCGGCCGTCCCGCTCGACGACCTCGTCGCCGCCGGCGCCGCCATCGAGAC
GCTGCTCTCCGTCGAGGCCCAGCGCTCTGTGCCGGCGCTGGCCAATCTCCTAGAGGGCCT
CGGGAAGGACGGCAGCCTCGTCGCCTTCGTGGCGGACCTCTTCGGCGCCGACACGCTGCG
CGCGGCGCGCGACGTCGGCGTG

Homology of Contig U35_22837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None