barSeed - Barley Seed Development Database

Probe CUST_28069_PI390587928

Source Contig U35_25011

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28069_PI390587928	Hv_44K_v2	AGCTCCCCTTCCGGGAGAACCACAAGAGGGAGTATGGCGAGGTGTGGGGCTTCTTCTTCG	190	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11017.1	999	2e-24	247 - 306	100	60 / 60	plus	ABC17984 ABC21687
JLOC1	JLOC1_7255.1	801	8e-25	216 - 275	100	60 / 60	plus
Harvest21	ABC25548	366	3e-25	191 - 250	100	60 / 60	plus
Harvest35	U35_25011	366	3e-25	191 - 250	100	60 / 60	plus

Contig Sequence (366 bp)

>U35_25011 366 Hv_44K_v2
CTGTCTCTCGCCTACAACGTCGGTATCGGGTCGGCGATGGCGAACCCTAATCTGATAGCC
GGCTGCGTGTTCCAACCCACCGGCCGTGAGCTCGTCAACCACTACCTCGTCCCCAGGGCG
GGGCTCGGCGGCGACATCGTCCCCGGCTTCATCGAGGAGGGCGTGGACGTCTTGTCCTTG
CCCCCGCGCAAGCTCCCCTTCCGGGAGAACCACAAGAGGGAGTATGGCGAGGTGTGGGGC
TTCTTCTTCGCGGCGCAGCCCGCCAGGCAGACGTGCCCGCCGCCAGGCGCGGGCGGGTAC
TGGGTCCAGTACGGCCCCGAGAAGGCGTACTACGGCCAGACCGGCGGGGAGGCGGTGGCG
TTCCGC

Homology of Contig U35_25011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None