barSeed - Barley Seed Development Database

Probe CUST_28063_PI390587928

Source Contig U35_25018

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28063_PI390587928	Hv_44K_v2	TGCCCTCAAGGCCGGATTGGATTTGAACTGCGGGAACTACACGCAGGTGCACGGCATGGC	631	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.901	5.285	1.287	0.370	0.838	0.783
Raw	63.900	59.440	14.407	4.034	3.487	4.109

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54205.1	2650	2e-24	1531 - 1590	100	60 / 60	minus	ABC13674
JLOC1	JLOC1_34877.1	2598	8e-25	979 - 1038	100	60 / 60	plus
Harvest21	ABC21615	734	3e-25	632 - 691	100	60 / 60	plus
Harvest35	U35_25018	734	3e-25	632 - 691	100	60 / 60	plus

Contig Sequence (734 bp)

>U35_25018 734 Hv_44K_v2
ACTTCGACGGCGCCGTCCGCGCCATCACCAGCTTCCCGCAGGTGCTGCTCACCGCCGCCG
CCTTCGACGAGCAGCTGTGGTACCTCATCGGCCAGGCGATCGGGACGGAGGCTCGGGCGC
TGTACAACCTGGGGCAGGCGGAGGGGCTGACCATCTGGTCGCCCAACGTGAACATCTTCC
GCGACCCGCGGTGGGGCCGCGGCCAGGAGACCCCCGGCGAGGACCCCACGACGGCGAGCA
AGTACGCCGTGGCGTTCGTGCGCGGCCTGCAGGGCTCCTCGCCGACGACGCTGCAGACCT
CGGCGTGCTGCAAGCACGCCTCGGCCTACGACCTGGAGGCCTGGAACGGCGCCATCCGCT
ACAACTTCAACGCGAGGGTGACGGCGCAGGACATGGCGGACACCTTCAACCCGCCCTTCA
AGAGCTGCGTGGAGGAAGGCCGGGCCAGCTGCGTCATGTGCGCCTACACCACCATCAATG
GCGTCCCCGCCTGCGCCAGCAACGACCTCCTCTCCACGACCTTCAAGGGGGATTGGGGGT
TGAACGGCTACGTCTCTTCCGACTGTGACGCGGTGGCGCTCATGCACGACGCGCAGTTCT
ACCGGCCCTCGCCGGAGGAGACGGTCGCCGTTGCCCTCAAGGCCGGATTGGATTTGAACT
GCGGGAACTACACGCAGGTGCACGGCATGGCCGCCGTGCGGCAGGGAAGGATGACGGAGC
AGGACGTGGACAGG

Homology of Contig U35_25018 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g18730.1	772	4e-149	protein\|glycosyl hydrolase family 3 protein, putative, expressed
Brachypodium v1_2	Bradi4g20197.1	762	5e-154
Arabidopsis v10	AT1G78060.1	767	5e-105	Glycosyl hydrolase family protein \| chr1:29349796-29352868 REVERSE LENGTH=767