barSeed - Barley Seed Development Database

Probe CUST_28060_PI390587928

Source Contig U35_13041

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28060_PI390587928	Hv_44K_v2	GTTCTAATATATTCACCAGATGGGCGATGCTTGTTCAAATATTCGGCATATGAAAGTGGG	753	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249496.1	1891	2e-24	776 - 835	100	60 / 60	plus	None
MLOC	MLOC_64274.1	1530	2e-24	484 - 543	100	60 / 60	plus	None
JLOC1	JLOC1_42190.1	1681	8e-25	494 - 553	100	60 / 60	plus
Harvest21	ABC48062	645	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_13041	816	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (816 bp)

>U35_13041 816 Hv_44K_v2
CTCTAGGAAAATCGACCTTCCAACGCAGCCCCCACCCCCACCCCCACCTCGCCTGAGCAG
TACGCCGGCGACCGACAGGCCTTCAGCCCCCCCTCTCCCCTCCACTCCCGCGACGACCAG
GGGGGAGGCGCCGAGCGAGTAGGGGGGATGGAGTTCACGGAGGCGTACAAGCAGACGGGC
CCGTGCTGCTTCTCTCCCGACGCCCGCTTACTCGCCGTCGCCGTCGACTACCGCCTCGTG
ATCCGCGACGTCGTCACCCTCAAGGTGGTGCAGTTGTTTTCGTGTGTGGACAAGATAAAC
TTTTTGGAGTGGGCACCGGATTCAGAATACATTCTATGTGGACTTTACAAGCGGCCAATG
GTGCAGGCTTGGTCACTTAGCCAGCCTGACTGGACCTGTAAGATTGATGAAGGATCTGCA
GGGATTGCTTATGCTCGCTGGAGTCCTGACAGTCGGCATATACTCACTACATCAGAGTTC
CAACTTCGTTTGACTGTATGGTCTCTTGTAAATACTGCCTGTGTTCATGTACAGTGGCCA
AAGCATGCAGCAAGAGGTGTTTCTTTCACTAAGGATGGCAAGTTTGCTGCGATCTGCACC
AGGCGGGACTGCAAAGATTACGTAAATTTGCTGTCATGTCATTCCTGGGAGATAATGGGT
GTATTCGCTGTTGACACACTAGACTTAGCAGGCGTGGAGTGGTCGCCTGATGACAGTGCT
ATTGTGGCCTGGGATTCACTTCTTGAATACAAGGTTCTAATATATTCACCAGATGGGCGA
TGCTTGTTCAAATATTCGGCATATGAAAGTGGGTTA

Homology of Contig U35_13041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41370.1	471	7e-157	protein\|WD repeat-containing protein 8, putative, expressed
Brachypodium v1_2	Bradi3g33520.2	434	8e-157
Arabidopsis v10	AT5G07590.1	458	1e-141	Transducin/WD40 repeat-like superfamily protein \| chr5:2401712-2403731 REVERSE LENGTH=458