- Probe CUST_28059_PI390587928
- Source Contig U35_13042
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28059_PI390587928 | Hv_44K_v2 | TTTAGAAAACTGTTCCAAGATACAGGAACATTGTGTTTGATGTTTACGGAACAGTGGGAC | 423 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.874 | 1.722 | 1.171 | 0.763 | 0.457 | 0.603 |
| Raw | 816.259 | 1183.737 | 696.062 | 705.557 | 147.439 | 216.033 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63506.1 | 1346 | 2e-24 | 1167 - 1226 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_41600.1 | 1424 | 8e-25 | 1181 - 1240 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25031 | 486 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13042 | 486 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus |
Contig Sequence (486 bp)
>U35_13042 486 Hv_44K_v2 TGGAGAGGTGATACAATCTGAAAAGGAGAAGCGGACCTCAAAAGAAAGAGCAAAAATGCT GCAGAAGAACTGGTCAATGGTACCAATAATCAAGACATGAAGAAGCAGAAAATCAAGTGG AAGAAAATTATTACGAAGATACTGGAGACGAAATCGGATGGAGCTATGAAGTTGAAGAAG CTACAAAAGCTAGTTATCAAGGAAGTTTTAGAATGTGGTCTGTTGAAAGATAAGGAGCAG CTGCATGCTCTGTTGATGGACAAGATAGCTTCGAGCTCCAGGTTTTCTGTGGATGGGAAG AACATTAGATTGGTGGCTAAGAATGAAGAATCATAGTTCCTGACATTTTCTTGTGCTCTA AAATGATACATGCAGTATTATTTTTGGAGCTGTTAATTTTGGCTTTGTTATGTGCCTGTA TCGTTTAGAAAACTGTTCCAAGATACAGGAACATTGTGTTTGATGTTTACGGAACAGTGG GACCAA
Homology of Contig U35_13042 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |