barSeed - Barley Seed Development Database

Probe CUST_28053_PI390587928

Source Contig U35_13049

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28053_PI390587928	Hv_44K_v2	GATTCTTCATTGTAGCGACGGATGATTCTTACTGCAAAGAGATCTCTATTGTAAAAGATT	365	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68201.2	2021	2e-24	1931 - 1990	100	60 / 60	plus	ABC26545 ABC39897 ABC40171
MLOC	MLOC_68201.1	2041	7e-23	77 - 136	98	59 / 60	minus	ABC26545 ABC39897 ABC40171
Harvest21	ABC40171	453	1e-23	29 - 88	98	59 / 60	minus	ABC40171
Harvest35	U35_13049	463	3e-25	366 - 425	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_13049 463 Hv_44K_v2
TACAACCCCAAAACGGACCCCAAGAAGTTCAACTACCACAACCCGCAGTTGAGGAACACG
GTGCAGGTGCCCAGGACCGGCTGGGCTGCTGTGCGCTTCGTCACCGACAACCCCGGAATG
TGGTACCTCCACTGCCATTTCGAGTTCCACATCATCATGGGCATGGCCACGGCGTTCATC
GTGGAGAACGGGCCGACGCCGGAGACCAGCTTGCCCCCGCCGCCACCGGAATTCAAGAGG
TGTGGCTCCAATGGCCTAACTCAGCCATAGAGATAATTAATCTGGATGAGGACTAAGGGC
CTACTTATGAAAGTTGGGTCATGATAATTAGTAGTACAAAATAAGAACAAATAAGGGTGC
ACGTGGATTCTTCATTGTAGCGACGGATGATTCTTACTGCAAAGAGATCTCTATTGTAAA
AGATTTATATTTTTTTCAAATTTATTTCCAAATTGCAATAAAG

Homology of Contig U35_13049 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None