barSeed - Barley Seed Development Database

Probe CUST_28052_PI390587928

Source Contig U35_25020

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28052_PI390587928	Hv_44K_v2	CAAGTTACACGGTGTAAGGCTTTGTAGCTGTGATATTAGAAACAGACTGAAATGAAATAG	227	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.644	1.484	1.165	0.955	0.360	0.416
Raw	1021.625	1444.204	996.970	1290.833	169.297	211.897

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374589	1544	2e-24	1467 - 1526	100	60 / 60	plus	ABC23293
MLOC	MLOC_66400.3	839	2e-24	32 - 91	100	60 / 60	minus	ABC23293
MLOC	MLOC_66400.4	600	2e-24	18 - 77	100	60 / 60	minus	ABC23293
MLOC	MLOC_66400.5	1208	2e-24	18 - 77	100	60 / 60	minus	ABC23293
JLOC1	JLOC1_43749.1	994	8e-25	897 - 956	100	60 / 60	plus
Harvest21	ABC23293	314	3e-25	228 - 287	100	60 / 60	plus	ABC23293
Harvest35	U35_25020	314	3e-25	228 - 287	100	60 / 60	plus

Contig Sequence (314 bp)

>U35_25020 314 Hv_44K_v2
GACTGCATATAGTGAAAGATGCCAGCAGGGTCGGCAGAGATCATGATGTTTCCTTGTAAG
GCTTATTTGATCTTTTTGCAGAATCAGTTGCTCAAATAATCCGTTAGGTCACTAATTCAT
CACTATGGTGGTGTTCATTTTGGTAGTGGTTTTGTGTTGATGTTACTGCTTACCGTACCT
TTAAGAGCAGAATTTTGGTAACAAACTGGTTTTGGAAACTAAACGTGCAAGTTACACGGT
GTAAGGCTTTGTAGCTGTGATATTAGAAACAGACTGAAATGAAATAGAAAAAAAAATCTG
GAGAAAAAAAAAAA

Homology of Contig U35_25020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None