barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_28049_PI390587928Hv_44K_v2ATTAGCATGGCGTACTCCTCCTGTTTGAATCGGAGTTTGAAACCAAACAAACTTCTCCTC476GeneList: black
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8400.4710.4591.0631.9321.841
Raw 5316.2304063.5374048.14713659.7439187.3339781.267



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_1413.12108e-25137 - 19610060 / 60plus
Harvest21ABC530394393e-25275 - 33410060 / 60plus
Harvest35U35_250247253e-25477 - 53610060 / 60plus



Contig Sequence (725 bp)

>U35_25024 725 Hv_44K_v2
CCGTACTGGAAGGTGCGGCTGGATCACCTCCTTTTCAGGGAGAGCTAATGCTTATGCTTA
TTGGGTATTTTGGTTTGACACTTCTTCACGCCCAAAAAGAAGGCAGCTACGTCTGAGCTA
AACTTGGATATGGAAGTCTTCTTTCGTTTAGGGTGAAGTAAGACCAAGCTCATCAGCTTA
TTATCCTAGGTCGTAACAAATTAGTTGATAGTGATAGGATCCCTTTTTTGACGTCCCCAT
GTCCCCCCTGTGGTGTGGCGGCATGGGGATGTCAAAAGGAAAGGGATGGAGTTTTTCTCG
CTTTTGGCGTAGCAGGCCTCCCTTTGGGAGGCCCGCGCGACGGGCTATTAGCTCAGTGGT
AGAGCGCGCCCCTGATAATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATG
GATAGTTCAATGTGCTCATCAGCGCCTGACCCGAAGATGTGGATCATCCAAGGCACATTA
GCATGGCGTACTCCTCCTGTTTGAATCGGAGTTTGAAACCAAACAAACTTCTCCTCAGGA
GGATAGATGGGGCGATTCAGGTGAGATCCCATGTAGATCTAACTTTCTATTCACTCGTGG
GATCCGGGCGGTCCGGGGGGGGGCCACCACGGCTCCTCTCTTCTCAAAAAAAAAAAAAAA
AGAAAAAAAAATACAAAGAAAGAAAAGAAAATAAAAAAAAAAATTAACAAAAAAAAAAAA
AAAAA



Homology of Contig U35_25024 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None