- Probe CUST_28044_PI390587928
- Source Contig U35_37001
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28044_PI390587928 | Hv_44K_v2 | GGACTGGTTGTGTGTTCAACAGAACAGCTTTATATGGTTATGAACCCGGGGGGAAGAAAA | 82 | GeneList: red MasterList: Transferase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.900 | 1.146 | 1.362 | 0.944 | 0.602 | 0.498 |
| Raw | 617.429 | 1116.477 | 1235.140 | 1181.790 | 297.308 | 271.642 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC32550 | 142 | 3e-25 | 83 - 142 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37001 | 142 | 3e-25 | 83 - 142 | 100 | 60 / 60 | plus |
Contig Sequence (142 bp)
>U35_37001 142 Hv_44K_v2 GATANATATNCAAACANNAACACCCTNTTTTTTNATATTAACTTNAGGNNTCTCNATNNC ATTCAAGGACCAGTTTATGTGGGGACTGGTTGTGTGTTCAACAGAACAGCTTTATATGGT TATGAACCCGGGGGGAAGAAAA
Homology of Contig U35_37001 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |