barSeed - Barley Seed Development Database

Probe CUST_28040_PI390587928

Source Contig U35_13052

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28040_PI390587928	Hv_44K_v2	TGGGCATGCTCTTGCTGTATATGATGTGATTAGAACTCAATGGCGACTATTATTGTCAAA	612	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.115	0.076	0.671	2.285	1.508	2.328
Raw	22.840	25.441	192.802	1064.444	236.421	396.861

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_43185.1	2209	6e-21	2048 - 2107	97	58 / 60	plus
Harvest21	ABC22073	686	3e-25	15 - 74	100	60 / 60	minus	ABC22073
Harvest35	U35_13052	686	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_13052 686 Hv_44K_v2
GAAACTATGGCTGACTAAAGGGATGTTCCGGGCAAATGGTGGTTGTGGTTATGTGAAAAA
GCCTGATTTCCTTATGAACACGGATAAAATGTTTGACCCAAGATCCAAATTACCAGTGAA
GACAAGGCTCAAGGTGACTGTCTACATGGGAGACGGGTGGCGATTTGATTTCCGCAAGAC
ACATTTCGATAAGTGCTCGCCACCAGACTTTTATGCAAGGGTGGGTATAGCAGGAGTTGT
TGCAGACACAATGATGAAGGAGACGAAGGTGATCATGGACAACTGGATACCGACATGGGA
CCACGAGTTCGAGTTCCCGTTGGCCGTGCCAGAGCTCGCGCTGCTCCGGGTCGAGGTGCA
CGAGTCCGACAACCACCAGAAGGACGACTTCGCCGGCCAGACCTGCCTGCCGGTCTGGGA
GCTCCGGTCTGGGATACGCTCCGTCAGGCTCTACGCCCGCGACGGCGAGGTGCTGCGCTC
GGTCAAGCTCCTCATGCGCTTCGAGTTCTCATAAAGGATCGAGCTCGCGAGCTTTTCCCT
GTTCATCCTGGCGATGTTGGTGGTGTGTGTAAAAAGATTGGAAATTTTTGTTCGTTGGTA
CCTCTGTCATTGTGGGCATGCTCTTGCTGTATATGATGTGATTAGAACTCAATGGCGACT
ATTATTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g03610.1	599	1e-101	protein\|phospholipase C, putative, expressed
Brachypodium v1_2	Bradi2g38170.1	603	3e-106
Arabidopsis v10	AT3G55940.1	584	2e-79	Phosphoinositide-specific phospholipase C family protein \| chr3:20747787-20750184 FORWARD LENGTH=584