barSeed - Barley Seed Development Database

Probe CUST_28025_PI390587928

Source Contig U35_25039

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28025_PI390587928	Hv_44K_v2	TGTAGGCACTTGTGCAACACTTTTGACATGAAAGGTCATGTCGCGCGAGTATCCAAAAAA	345	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.061	0.046	0.737	2.368	1.345	1.451
Raw	56.990	64.007	893.556	4584.427	880.463	1041.906

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52161.2	1082	3e-22	999 - 1054	100	56 / 56	plus	ABC25867
MLOC	MLOC_52161.1	1485	3e-22	1400 - 1455	100	56 / 56	plus	ABC25867
JLOC1	JLOC1_33385.2	1355	1e-22	1152 - 1207	100	56 / 56	plus
JLOC1	JLOC1_33385.1	1622	1e-22	1419 - 1474	100	56 / 56	plus
Harvest21	ABC25867	415	3e-25	345 - 404	100	60 / 60	plus	ABC25867
Harvest35	U35_25039	416	3e-25	346 - 405	100	60 / 60	plus

Contig Sequence (416 bp)

>U35_25039 416 Hv_44K_v2
CGGCGGAGTACCTGACCAAGCTCACGTACCTGATATGGAACCACCACGAGGAGATCCGGC
ACATCGACACGGTGAGGGCCTACACCTTCGGGACGCACTACTTCGTGGAGGTGGACGTGG
TGCTGCCCGGGGACATGCCGCTCAGCCAGGCGCACGACATCGGGGAGGCGCTGCAGGAGA
AGCTGGAGCAGCTGCCGGAGGTGGAGCGCGCCTTCGTACACGTCGACTTCGAGTTCACAC
ACCGACCAGAGCACAAGGCCGACGTCTGATCTGATCTCATCTCATCATGCTCTTCTCCTC
AAATATGTGTATGTATGTATGGATGCTTGGGAAGTACTACTAGTTTGTAGGCACTTGTGC
AACACTTTTGACATGAAAGGTCATGTCGCGCGAGTATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_25039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03914.2	382	1e-55	protein\|cation efflux family protein, putative, expressed
Brachypodium v1_2	Bradi2g02050.1	405	8e-56
Arabidopsis v10	None