- Probe CUST_28022_PI390587928
- Source Contig U35_37012
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28022_PI390587928 | Hv_44K_v2 | TGATCACAATGTACAGGCATAAAAAATAAACTGACTACTGGGAGGACATTGGAACAATCA | 137 | GeneList: plum1 MasterList: Starch_synthesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.048 | 0.101 | 0.796 | 1.294 | 1.724 | 1.567 |
| Raw | 38.004 | 99.510 | 867.699 | 1843.830 | 1036.731 | 1009.047 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC32582 | 222 | 3e-25 | 138 - 197 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37012 | 222 | 3e-25 | 138 - 197 | 100 | 60 / 60 | plus |
Contig Sequence (222 bp)
>U35_37012 222 Hv_44K_v2 AAAAAACATGCTAAAAACTCATACGTGGGTTGGAAGGGAGTTTATGTCTTAAAGAGAGAT GTTCTTCTGAACCTTTTAAAGTCAAGATACGCAGAACTACATGACTTTGGGTCTGAAATA CTTCCGTGAGCTCTGCATGATCACAATGTACAGGCATAAAAAATAAACTGACTACTGGGA GGACATTGGAACAATCAGATCCTTNTTGGATGCGAACATGGC
Homology of Contig U35_37012 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |