barSeed - Barley Seed Development Database

Probe CUST_28019_PI390587928

Source Contig U35_37016

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28019_PI390587928	Hv_44K_v2	TCTTTGCCCTAGAGCCCCTAGAAGCCTGGAATAGAACACCTATATATATGCTGCTGATGA	460	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.313	1.510	1.092	0.887	0.444	0.458
Raw	1401.551	2521.862	1585.903	2031.654	353.483	402.792

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20697.2	401	2e-24	14 - 73	100	60 / 60	minus	None
MLOC	MLOC_20697.1	1282	2e-24	108 - 167	100	60 / 60	minus	None
JLOC1	JLOC1_14349.1	730	8e-25	492 - 551	100	60 / 60	plus
Harvest21	ABC32589	523	3e-25	461 - 520	100	60 / 60	plus
Harvest35	U35_37016	523	3e-25	461 - 520	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_37016 523 Hv_44K_v2
GCCCGCCTCGGGCTCCCAGGTTCGCGGTGGCGCACGCGAAGGGTTCCGGTATGGAGGCGG
CCGCCGACGAGGAGCAGGAGGGGCTGTCCGCGCAATCTCCGGCGCAGGCGCCGCCTTCCT
CGGCGTCATCCCTTCCAAAGGAGCAGTCGCAGGTGGAGCTGGAGCTGAGGCTGCTCCAGG
CCCTCGAGTTCTACCCTCCCTCCAAACTGAAAGGCATTCATCGTCACTTCATTCTCTACG
GCCTCATGGAATACTTGAGAAAAAGCCTCGACAGGCAATTCTCCGCGGATGAAGTTTTGC
AACTGCTGGACCGCTTCTTCAACCTAGAAATGCTGAAACCAGACGACGACGAGAAGGAGA
ACTTCGGCCAGACGGAAGAATTCGCCTTGCCGGACAGTTTTTTCAAGAAGGAAGAATGAC
GGGCGTGTTAGCTGTTTCTTTGNGTTCTTTTCCTCTGTAGTCTTTGCCCTAGAGCCCCTA
GAAGCCTGGAATAGAACACCTATATATATGCTGCTGATGAGCT

Homology of Contig U35_37016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43680.1	123	1e-59	protein\|expressed protein
Brachypodium v1_2	Bradi2g20080.1	121	1e-57
Arabidopsis v10	None