barSeed - Barley Seed Development Database

Probe CUST_28011_PI390587928

Source Contig U35_13067

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28011_PI390587928	Hv_44K_v2	ACGTTTTCACTTCCCGAAAGCGTAGTTCATGGAATACACTTTCTGTTTTATCCCAAAAAA	348	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.121	0.365	0.710	1.583	1.632	1.373
Raw	5.763	33.887	58.183	198.187	72.514	66.977

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_13067	419	3e-25	349 - 408	100	60 / 60	plus

Contig Sequence (419 bp)

>U35_13067 419 Hv_44K_v2
CCACGCGTCCGCCGCGGCCTGCCCCATGGCGCCGGCGGTGTGGTCCACCCCGAGCAGCCC
CGCGGCTACCAATGGACGCGGTGAGGGACGACAGAGCATGTGCGCCCTCCGGTCGGCCCG
CTCGGGCGGCGAGGCGACGGCCAGGCCTACGGTCGGAGCCCACCCTCGTCTCTCTGTCGC
GGTGGATAAGAAGAAAGGAGGAGGCGAGAGGAGATGAGGCGGGGCCCGCGTGTCAGCTGG
AGAGAGAGAGTCAATCCGGACCCCGAGTCAGATTAAGTGGAAGCGTATTTTCTGTTTTAC
GCTTTCGTTTCAGTGAAAGCGTAAACTGTTGCGGCTTCGCCCGGAAATACGTTTTCACTT
CCCGAAAGCGTAGTTCATGGAATACACTTTCTGTTTTATCCCAAAAAAAAAAAAAAAAG

Homology of Contig U35_13067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None